View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_47 (Length: 325)
Name: NF1532_high_47
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 6543041 - 6542746
Alignment:
| Q |
1 |
aagtattgggtgttttgcaagcacaatagggttccaacccatgtgatcaacnnnnnnnttcattgttgcctcaattttattaacagatgccaacatacac |
100 |
Q |
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| T |
6543041 |
aagtattgggtgttttgcaagcacaatagggttccaacccatgtgatcaacaaaaaaattcattgttgcctcaattttattaacagatgccaacatacac |
6542942 |
T |
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| Q |
101 |
catggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaatcttcctttcccaaaggaattttctattaatct |
200 |
Q |
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| T |
6542941 |
catggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaatcttcctttcccaaaggaattttctattaatct |
6542842 |
T |
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| Q |
201 |
tagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttccaccaccgccttctcaaatcttggagggttctcag |
296 |
Q |
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| T |
6542841 |
tagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttccaccaccgccttctcaaatcttggagggttctcag |
6542746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 68 - 262
Target Start/End: Complemental strand, 6534225 - 6534031
Alignment:
| Q |
68 |
gcctcaattttattaacagatgccaacatacaccatggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaa |
167 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| | | | |||| ||||||||||||||||||||||| | || || |
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| T |
6534225 |
gcctcaattttttcctcagatgccaacatacaccatggatacttcaaaaatgctgaggcgataatttcatcagaccaaccccatttcttatacaaataaa |
6534126 |
T |
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| Q |
168 |
tcttcctttcccaaaggaattttctattaatcttagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttcc |
262 |
Q |
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| T |
6534125 |
tcttcctttcccaatgggatttgctattaatcttagcccgcaatgcgacgatgaaaagggttgttttggggtcaaatcctaattctttaacttcc |
6534031 |
T |
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