View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_48 (Length: 324)
Name: NF1532_high_48
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 39082540 - 39082835
Alignment:
| Q |
18 |
aaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttata |
117 |
Q |
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| T |
39082540 |
aaccattttggagaagggcttgggggaagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttata |
39082639 |
T |
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| Q |
118 |
tatttttactctttatttcgagagattagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaaca |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39082640 |
tatttttactctttattttgagagattagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaaca |
39082739 |
T |
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| Q |
218 |
atgattatacacattggcaacaatatgcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
313 |
Q |
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| T |
39082740 |
atgattatacacattggcaacaatatgcaattggtggaagttcgtccccaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
39082835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 31727177 - 31727458
Alignment:
| Q |
18 |
aaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31727177 |
aaccattttggagaagggcttgggggaagaatgccaaggtaggtttattagttaatttttctctgccacagtaattaagccctacttgccatttgttata |
31727276 |
T |
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| Q |
118 |
tatttttactctttatttcgagagattagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaaca |
217 |
Q |
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| T |
31727277 |
tatttttactctt--------------attcctaacagtttgaaattttttctacacgaatgttgcagatgcaggttcggatactttcatgtggtgaaca |
31727362 |
T |
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| Q |
218 |
atgattatacacattggcaacaatatgcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31727363 |
atgattacacacattggcaacaatatgcaatcggtggaagttcgtcccgaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
31727458 |
T |
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