View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_high_51 (Length: 311)

Name: NF1532_high_51
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_high_51
NF1532_high_51
[»] chr1 (1 HSPs)
chr1 (1-298)||(6885548-6885839)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 6885839 - 6885548
Alignment:
Q  1 tgtattctcctaacttattatattttcttccatctcaatcactaatcagtaatcactatgttggcatcaataataattcgagaaaatacagtaattcaat 100  Q
    |||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6885839 tgtattctcctaacttattatattttcttccatct-------taatcattaatcactatgttggcatcaataataattcgagaaaatacagtaattcaat 6885747  T
Q  101 gcgaccatatgtgttgttaatgtatcgatctatgctacattttccatgtatatgttcaactcaaacctcacataaatttttgggctaattctatggtgcg 200  Q
    || ||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  6885746 gcaaccatatgtgttgttgatgtatcggtctatgccacattttccatgtatatattcaactcaaacctcacataaatttttgggctaattctatggtgct 6885647  T
Q  201 aacgtgaaaagtcttgcacacactttttgtttttgtttgtaaagaaccgttgtcaata-tgttacaccaatggatcatgtttgactgtaatattcttcg 298  Q
     ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  6885646 tacgtgaaaagtattgcacacgctatttgtttttgtttgtaaagaaccgttgtcaatagtgttacaccaatggatcatgtttgactgtaattttcttcg 6885548  T

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