View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_high_52 (Length: 309)

Name: NF1532_high_52
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_high_52
NF1532_high_52
[»] chr1 (1 HSPs)
chr1 (1-304)||(6885647-6885943)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 6885943 - 6885647
Alignment:
Q  1 cttaggtgaattgttcatcaagaaaatgcctcttgtaagctacatatatgctgcctccaagcaaattagtgctgcaatatcaccgggtatgtatattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6885943 cttaggtgaattgttcatcaagaaaatgcctcttgtaagctacatatatgctgcctccaagcaaattagtgctgcaatatcaccgggtatgtatattttt 6885844  T
Q  101 taaatgtattctcctaacttattatattttcttccatctcaatcactaatcagtaatcactatgttggcatcaataataattcgagaaaatacagtaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6885843 taaatgtattctcctaacttattatattttcttccatct-------taatcattaatcactatgttggcatcaataataattcgagaaaatacagtaatt 6885751  T
Q  201 caatgcgaccatatgtgttgttaatgtatcgatctatgctacattttccatgtatatgttcaactcaaacctcacataaatttttgggctaattctgtgg 300  Q
    |||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  6885750 caatgcaaccatatgtgttgttgatgtatcggtctatgccacattttccatgtatatattcaactcaaacctcacataaatttttgggctaattctatgg 6885651  T

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