View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_68 (Length: 269)
Name: NF1532_high_68
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_68 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 6543420 - 6543171
Alignment:
| Q |
20 |
atcacagatgtgagacaccacttgcatatcagtgctatcttcaaaacaaggttctagattgcagtcaccgtcaaatccagtagatgaccatggtcatgtc |
119 |
Q |
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| T |
6543420 |
atcacagatgtgagacaccacttgcatatcagtgctatcttcaaaacaaggttctagattgcagtcaccgtcaaatccagtagatgaccatggtcgtgtc |
6543321 |
T |
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| Q |
120 |
gcaaaaacccttgatgtaacttctctcagattgtggttgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttttctcttca |
219 |
Q |
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| T |
6543320 |
gcaaagacccttgatgtaacttctctcagattgtggtcgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttttctcttca |
6543221 |
T |
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| Q |
220 |
tacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
269 |
Q |
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| T |
6543220 |
tacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
6543171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 6540900 - 6540797
Alignment:
| Q |
147 |
agattgtggttgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttttctcttcatacaacttcaacagttgagaagcttct |
246 |
Q |
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| T |
6540900 |
agattgtgctcgcgaatctcccagcttaaaatcttttttcaaca-ccaattgaaaacatctattttctcttcatacaacttcaacagctgagaagcttct |
6540802 |
T |
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| Q |
247 |
tcctc |
251 |
Q |
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| T |
6540801 |
tcctc |
6540797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 6534488 - 6534422
Alignment:
| Q |
203 |
catcttttttctcttcatacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
269 |
Q |
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| T |
6534488 |
catctcttttctcttcatacaacttcaacagctgagatgcttcttcctcaaagcaattcacatatct |
6534422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 6534605 - 6534561
Alignment:
| Q |
39 |
acttgcatatcagtgctatcttcaaaacaaggttctagattgcag |
83 |
Q |
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| T |
6534605 |
acttgcatatctgtgccatcttcaaaacaaggttctaaattgcag |
6534561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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