View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_7 (Length: 534)
Name: NF1532_high_7
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 62 - 379
Target Start/End: Original strand, 6080006 - 6080325
Alignment:
| Q |
62 |
gttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtcatagataaattcgc |
160 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||| || ||||||||||||||| | |
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| T |
6080006 |
gttctttaacaaatactgatatatgtaaattttaaatcacaagtatttgtataacacaaggaaaatagagcttggttcttagagtcatagataaattttc |
6080105 |
T |
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| Q |
161 |
taatttca-----atacaacacacaaaaataagcaatcaactaagacatgtatcgttactgcaatagacaattataattttatttgtattgacattctta |
255 |
Q |
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| T |
6080106 |
taatttaatttgaatacagctcacaaaaataaacatttaattaagacatgtacaattattgcaatagacaattataatttt----gtattaacattctag |
6080201 |
T |
|
| Q |
256 |
ttttttatatcttttagaagcaagcaaacaatctgacgttcttaaataaaattaaaatgtaaca-aaatagaaatgaagtgcgagaacaattacaagtat |
354 |
Q |
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| T |
6080202 |
ttttccatatcttttagaagcaggcaaacactccgagtttcttaaa-aaaactaaaatgtaagagaaatagaaatgatgtttgagaacaattacaagtaa |
6080300 |
T |
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| Q |
355 |
aaaaactttataacatgaatataaa |
379 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
6080301 |
aaaaacattataacatgaatataaa |
6080325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 52 - 435
Target Start/End: Complemental strand, 6113941 - 6113555
Alignment:
| Q |
52 |
ctttattatcgttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtcatag |
150 |
Q |
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| T |
6113941 |
ctttactatagttcttcaacaaatactggtatttgtaaattttacatcacaagtatttctttatcataagaaaaactaggcttggttcatagagtcatag |
6113842 |
T |
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| Q |
151 |
ataaa--ttcgc---taatttcaatacaacacacaaaaataagcaatcaactaagacatgtatcgttactgcaatagacaattataattttatttgtatt |
245 |
Q |
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| T |
6113841 |
ataaacattctaatttaatttgaatacaacacacaaaaataaacatttaattaagacatgtacaattattgcaatagataattataat----tttgtatt |
6113746 |
T |
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| Q |
246 |
gacattcttattttttatatcttttagaagcaagcaaacaatctgacgttcttaaataaaattaaaatgtaaca-aaatagaaatgaagtgcgagaacaa |
344 |
Q |
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| T |
6113745 |
gacattttagttttccatatcttttcgaagcaagcaaacactatgagcttcttaaa-aataataaaatgtaagagaaatagaaatgatgtttgagaacag |
6113647 |
T |
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| Q |
345 |
ttacaagtataaaaactttataacatgaatataaaagtattggatta-taagtaagataaaaactattttacaacttaactattaaacatat |
435 |
Q |
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| T |
6113646 |
ttacaagtatgaaattattataacatggatataaaagtataggattattgataaaggtaaaaactatttttcaacttacctattaaacatat |
6113555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 52 - 435
Target Start/End: Original strand, 6089501 - 6089886
Alignment:
| Q |
52 |
ctttattatcgttctttatcaaatacttatatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtcatag |
150 |
Q |
| |
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||||| ||| ||| |||| |||||||| ||||| ||||||||| |||||||||| || | ||||||| | |||| || |||||||||||| |||||||| |
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| T |
6089501 |
ctttactatagttttttaacaaatactggtatatataaattttacatcacaagtaattttttaacacaaggaaaactgggcttggttcatagagtcatag |
6089600 |
T |
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| Q |
151 |
ataaa--ttcgc---taatttcaatacaacacacaaaaataagcaatcaactaagacatgtatcgttactgcaatagacaattataattttatttgtatt |
245 |
Q |
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| T |
6089601 |
ataaacattctaatttaatttgaatacaatatacaaaaataaacatataattaagatatgtacaattattgcaatagccaattataatttt----gtatt |
6089696 |
T |
|
| Q |
246 |
gacattcttattttttatatcttttagaagcaagcaaacaatctgacgttcttaaataaaattaaaatgtaaca-aaatagaaatgaagtgcgagaacaa |
344 |
Q |
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| T |
6089697 |
gacattttagtttttcatatcttttagaagcaagcaaacactccgagcttcttaaaaataat-aaaatgtaagagaaatataaatgatgcttgagaacaa |
6089795 |
T |
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| Q |
345 |
ttacaagtataaaaactttataacatgaatataaaagtattggattataagtaagataaaaactattttacaacttaactattaaacatat |
435 |
Q |
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|||||||||| ||||| |||| ||||||||||||| |||| ||||| | ||||| |||||| |||| | ||||||| ||||||||||||| |
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| T |
6089796 |
ttacaagtatcaaaacattatgacatgaatataaatgtataggattgttggtaaggtaaaaaatattgttcaacttacctattaaacatat |
6089886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 81 - 435
Target Start/End: Complemental strand, 6120803 - 6120447
Alignment:
| Q |
81 |
tatatgtaaattttaaatcacaagtatttctataacacatgaaaaaatgagcttggttcata-agtcatagataaa--ttcgc---taatttcaatacaa |
174 |
Q |
| |
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||||||||||||||| ||||||||||||||| || |||| | |||| || | |||||||||| |||| |||||||| ||| |||||| ||||||| |
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| T |
6120803 |
tatatgtaaattttacatcacaagtatttctttatcacaaggaaaattgggtttggttcatagagtcgtagataaacattctaatttaatttgaatacaa |
6120704 |
T |
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| Q |
175 |
cacacaaaaataagcaatcaactaagacatgtatcgttactgcaatagacaattataattttatttgtattgacattcttattttttatatcttttagaa |
274 |
Q |
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| T |
6120703 |
cacacaaaaacaaacatttaattaagacatgtacaattattgcaataaataattataatttt----gtattgacattttagttttccatgtcttttagta |
6120608 |
T |
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| Q |
275 |
gcaagcaaacaatctgacgttcttaaataaaattaaaatgtaaca-aaatagaaatgaagtgcgagaacaattacaagtataaaaactttataacatgaa |
373 |
Q |
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| T |
6120607 |
gcaaacaaacactatgagcttcttaaaaataat-aaaatgtaagagaaatagaaatgatgtttgagaacagttacaagtatgaaattattataacatgaa |
6120509 |
T |
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| Q |
374 |
tataaaagtattggattataagtaagataaaaactattttacaacttaactattaaacatat |
435 |
Q |
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|||||| |||| ||||||| |||| |||||||||||| ||||||| ||||||||||||| |
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| T |
6120508 |
tataaatgtataggattattgataaggaaaaaactatttttcaacttacctattaaacatat |
6120447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 6073124 - 6073185
Alignment:
| Q |
30 |
catggatacgtaggtattttgcctttattatcgttctttatcaaatacttatatatgtaaat |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073124 |
catggatacgtaggtattttgcctttattatcgttctttatcaaatacttatatatgtaaat |
6073185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 6069281 - 6069208
Alignment:
| Q |
362 |
ttataacatgaatataaaagtattggattataagtaagataaaaactattttacaacttaactattaaacatat |
435 |
Q |
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| T |
6069281 |
ttataagatgaatataaaagtataggattattggtaagctaaaaactatttttcaacttaactattaaacatat |
6069208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 492 - 534
Target Start/End: Original strand, 37188192 - 37188234
Alignment:
| Q |
492 |
aagaaaatacaacccatcaatgtgtatatatacgtaacataac |
534 |
Q |
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| T |
37188192 |
aagaaaatacaacccatcaatgtgtatatatacgtaacataac |
37188234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 492 - 534
Target Start/End: Original strand, 37893089 - 37893131
Alignment:
| Q |
492 |
aagaaaatacaacccatcaatgtgtatatatacgtaacataac |
534 |
Q |
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| T |
37893089 |
aagaaaatataacccatcaatgtgtatatatacgtaacataac |
37893131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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