View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_high_76 (Length: 252)
Name: NF1532_high_76
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_high_76 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32338310 - 32338068
Alignment:
| Q |
1 |
cacaaaaatttattgtgttgtttgtcgtgagccaccattctcgtagccatcacaaaactcttcgtatttctttgttgtttagatttcactgttctcgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32338310 |
cacaaaaatttattgtgttgtttgtcgtgagcaaccattctcgtagccatcacaaaactcttcgtatttctttgttgtttagatttcactgttctcgcta |
32338211 |
T |
|
| Q |
101 |
ccatcttgatataaagatttgcaaattttggaccaaatacatcacaatccttttattcatttttgtttataactaggaacaaagagattacataatactc |
200 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32338210 |
ccatcgtgatataaagatttgcaaattttggatcaaatacatcacattcctttgattcatttttgtttataactaggaacaaagagattacataatactc |
32338111 |
T |
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| Q |
201 |
attgtaa-nnnnnnnnagatcggtcgtttcctctcatcctatg |
242 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
32338110 |
attgtaatttttttttagatcggtcgtttcctctcatcctatg |
32338068 |
T |
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