View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_high_9 (Length: 527)

Name: NF1532_high_9
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_high_9
NF1532_high_9
[»] chr7 (4 HSPs)
chr7 (29-514)||(35375429-35375914)
chr7 (376-492)||(5726986-5727102)
chr7 (389-469)||(29264599-29264678)
chr7 (382-418)||(5747892-5747928)
[»] chr2 (6 HSPs)
chr2 (346-479)||(41931463-41931596)
chr2 (439-510)||(22398434-22398505)
chr2 (439-510)||(22968849-22968920)
chr2 (395-466)||(18690754-18690825)
chr2 (346-417)||(34415451-34415522)
chr2 (422-467)||(10130813-10130858)
[»] chr1 (6 HSPs)
chr1 (403-465)||(12729525-12729587)
chr1 (383-458)||(42293639-42293713)
chr1 (388-474)||(32056617-32056703)
chr1 (384-427)||(34385787-34385830)
chr1 (377-423)||(32743946-32743991)
chr1 (388-490)||(39155954-39156056)
[»] chr5 (3 HSPs)
chr5 (380-491)||(13063380-13063491)
chr5 (376-486)||(17365535-17365643)
chr5 (346-419)||(27689824-27689897)
[»] chr4 (8 HSPs)
chr4 (379-501)||(38943069-38943191)
chr4 (379-458)||(16972756-16972835)
chr4 (385-490)||(17766014-17766119)
chr4 (420-475)||(11883532-11883587)
chr4 (379-465)||(25578070-25578156)
chr4 (406-474)||(18825743-18825811)
chr4 (379-419)||(27059415-27059455)
chr4 (388-418)||(56335552-56335582)
[»] chr3 (5 HSPs)
chr3 (395-491)||(26719608-26719704)
chr3 (380-494)||(36599445-36599559)
chr3 (379-492)||(30603468-30603581)
chr3 (388-492)||(33425978-33426082)
chr3 (380-439)||(40964995-40965055)
[»] scaffold0027 (1 HSPs)
scaffold0027 (389-492)||(1216-1319)
[»] chr8 (2 HSPs)
chr8 (390-469)||(24735465-24735544)
chr8 (403-491)||(2287609-2287697)
[»] scaffold0362 (1 HSPs)
scaffold0362 (377-423)||(10659-10705)
[»] chr6 (1 HSPs)
chr6 (379-458)||(9437432-9437512)


Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 29 - 514
Target Start/End: Original strand, 35375429 - 35375914
Alignment:
Q  29 actaaacacatgctaagttgttcgactaacaactttaccaaatctatcatcgacttgatttttaaaacaataattgttgtcaatgtctcttttaacccta 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375429 actaaacacatgctaagttgttcgactaacaactttaccaaatctatcatcaacttgatttttaaaacaataattgttgtcaatgtctcttttaacccta 35375528  T
Q  129 cctagatccttaaaatgtgaagtgtacttcatcatgataatcgagagttattagattagtggcggggtgtaacatagacacacaaatatatgcaacaatg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35375529 cctagatccttaaaatgtgaagtgtacttcatcatgataatcgagagttattagattagtggcggggtgtaacatagacacacaaacatatgcaacaatg 35375628  T
Q  229 ttaaactccggtcttaatggaacaaattatgcggaaattagttcaactgtctgacatggccaataactaaactaaatcacttttctaaaactagttaaac 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35375629 ttaaactccagtcttaatggaacaaattatgcggaaattagttcacctgtctgacatggccaataactgaactaaatcacttttctaaaactagttaaac 35375728  T
Q  329 gcatttttcttcttcttcacattgcactaacattttttgtgatctagaatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacat 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375729 gcatttttcttcttcttcacattgcactaacattttttgtgatctacaatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacat 35375828  T
Q  429 cacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaatatggggaaattcaatctgtatat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375829 cacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaatatggggaaattcaatctgtatat 35375914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 376 - 492
Target Start/End: Complemental strand, 5727102 - 5726986
Alignment:
Q  376 aatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactaga 475  Q
    ||||||||||||||| |||||||| ||| |||||||  |||||||||||||| ||||||| ||| |||| ||| ||||||||||| |||| ||| ||||     
T  5727102 aatgcacaaaaccttatataaattagtgcgtttggtaaatttgcaaaccacaccacaaaaccattaacacttacccagtagatataaacattaagctagt 5727003  T
Q  476 tgcagtgtactacaata 492  Q
    |  ||| ||||||||||    
T  5727002 tttagtttactacaata 5726986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 29264599 - 29264678
Alignment:
Q  389 ttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaa 469  Q
    |||| |||||| ||||||||| ||||||||||||||||| ||||||| ||| |||| ||||| | ||||||||||||||||    
T  29264599 ttctttaaattagtgtgtttgattcatttgcaaaccacaccacaaaaccat-aacacttatctaatagatatgaacactaa 29264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 5747892 - 5747928
Alignment:
Q  382 caaaaccttctataaatttgtgtgtttggttcatttg 418  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  5747892 caaaaacttctataaattggtgtgtttggttcatttg 5747928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 479
Target Start/End: Complemental strand, 41931596 - 41931463
Alignment:
Q  346 cacattgcactaacattttttgtgatctagaatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaa 445  Q
    |||||||||| |||| |||||||| || |  |||||||| | |||| ||||||||||  |||||||||||||||||||||||  |||||| ||||||||     
T  41931596 cacattgcaccaacaatttttgtgctccacgatgcacaataacttcaataaatttgtacgtttggttcatttgcaaaccacacaacaaaaccatgaacac 41931497  T
Q  446 ttatccagtagatatgaacactaaactagatgca 479  Q
    |||| |||| ||||| |||| |||||||| ||||    
T  41931496 ttattcagttgatataaacattaaactagttgca 41931463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 22398505 - 22398434
Alignment:
Q  439 tgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaatatggggaaattcaatctgt 510  Q
    |||||||||||| |||||| ||||| |||||  |||||||| |||||||||| |||||||||  ||||||||    
T  22398505 tgaacaattatcaagtagaaatgaatactaagttagatgcaatgtactacaacatggggaaacccaatctgt 22398434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 22968920 - 22968849
Alignment:
Q  439 tgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaatatggggaaattcaatctgt 510  Q
    |||||||||||| |||||| ||||| |||||  |||||||| |||||||||| |||||||||  ||||||||    
T  22968920 tgaacaattatcaagtagaaatgaatactaagttagatgcaatgtactacaacatggggaaacccaatctgt 22968849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 18690825 - 18690754
Alignment:
Q  395 aaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacac 466  Q
    ||||| ||||||||||||||||| | ||||||  ||||||| |||||||| | ||||| ||||| |||||||    
T  18690825 aaattggtgtgtttggttcattttccaaccacgccacaaaaccatgaacactgatccaatagatttgaacac 18690754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 34415451 - 34415522
Alignment:
Q  346 cacattgcactaacattttttgtgatctagaatgcacaaaaccttctataaatttgtgtgtttggttcattt 417  Q
    |||||||||| |||| ||| |||| || |  | |||||||| |||||||||||| |||||||||||||||||    
T  34415451 cacattgcaccaacaatttctgtggtccacgacgcacaaaaacttctataaattagtgtgtttggttcattt 34415522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 10130813 - 10130858
Alignment:
Q  422 accacatcacaaaatcatgaacaattatccagtagatatgaacact 467  Q
    |||||| |||| ||||||||||| ||||| ||||||||||||||||    
T  10130813 accacaccacataatcatgaacacttatctagtagatatgaacact 10130858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 12729525 - 12729587
Alignment:
Q  403 gtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaaca 465  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  12729525 gtgtttggttcatttgcaaaccacatcacaaaaccatgaacacttatccaatagatatgaaca 12729587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 42293639 - 42293713
Alignment:
Q  383 aaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagat 458  Q
    |||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||||| | ||||| |||||||    
T  42293639 aaaaacttctataaattggtgtgtttggttcatttg-aaaccacaccacaaaatcatgaatatttatctagtagat 42293713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 32056703 - 32056617
Alignment:
Q  388 cttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactag 474  Q
    |||||||||||| | |||||||||||||||| ||||||||  ||| ||  ||||||| ||||| | || ||||||||||||||||||    
T  32056703 cttctataaattggcgtgtttggttcatttgaaaaccacacgacacaacaatgaacacttatcaaataaatatgaacactaaactag 32056617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 34385787 - 34385830
Alignment:
Q  384 aaaccttctataaatttgtgtgtttggttcatttgcaaaccaca 427  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  34385787 aaaccttctataagtttatgtgtttggttcatttgcaaaccaca 34385830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 32743946 - 32743991
Alignment:
Q  377 atgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaac 423  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||    
T  32743946 atgcacaaaaccttctat-aatttatttgtttggttcatttgcaaac 32743991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 39155954 - 39156056
Alignment:
Q  388 cttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtacta 487  Q
    |||||||||| | | |||||  ||||||||||||| |||| | |||||||||| ||| ||||||| ||||| | ||||| |  |||| |||||| |||||    
T  39155954 cttctataaagtagagtgttctgttcatttgcaaatcacaccgcaaaatcatggacacttatccaatagatgtaaacaccatgctagttgcagtttacta 39156053  T
Q  488 caa 490  Q
    |||    
T  39156054 caa 39156056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 380 - 491
Target Start/End: Complemental strand, 13063491 - 13063380
Alignment:
Q  380 cacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgca 479  Q
    |||| ||||||||||||||| || ||||  |||||||||||||||||| |||| || ||| |||| ||||||| ||||||| ||||| || |||| ||||    
T  13063491 cacataaccttctataaattggtttgttaagttcatttgcaaaccacaccacataaccattaacatttatccaatagatataaacaccaagctagttgca 13063392  T
Q  480 gtgtactacaat 491  Q
    |  |||||||||    
T  13063391 ggttactacaat 13063380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 486
Target Start/End: Original strand, 17365535 - 17365643
Alignment:
Q  376 aatgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactaga 475  Q
    ||||||| |||  ||||||||||| | |||||||||||||||| ||||||||  ||| || |||||||| ||||| ||| ||| | ||||| |||||||     
T  17365535 aatgcaccaaaaattctataaattggggtgtttggttcatttgtaaaccaca--acataaccatgaacacttatctagttgatgtaaacaccaaactagt 17365632  T
Q  476 tgcagtgtact 486  Q
    || ||||||||    
T  17365633 tgtagtgtact 17365643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 27689824 - 27689897
Alignment:
Q  346 cacattgcactaacattttttgtgatctagaatgcacaaaaccttctataaatttgtgtgtttggttcatttgc 419  Q
    ||||||||||| ||| |||||||| || |  | |||||||| |||||||||||  ||||||||| |||||||||    
T  27689824 cacattgcactgacagtttttgtggtccacgacgcacaaaaacttctataaataagtgtgtttgattcatttgc 27689897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 501
Target Start/End: Complemental strand, 38943191 - 38943069
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgc 478  Q
    ||||||||||||||||||||| |||||||||||||||||||||   | | |||| || |||  ||| |||| ||||||| |||||||| || |||| |||    
T  38943191 gcacaaaaccttctataaattggtgtgtttggttcatttgcaatgtagaccacataaccattgacatttattcagtagaaatgaacaccaagctagctgc 38943092  T
Q  479 agtgtactacaatatggggaaat 501  Q
    |  ||||||||| ||||| ||||    
T  38943091 aacgtactacaacatgggaaaat 38943069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 16972835 - 16972756
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagat 458  Q
    ||||| || ||| |||| ||| ||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||    
T  16972835 gcacataaacttatatatattggtgtgtttggttcatttgcaaaccacaccacaaaactgtgaacacttatccagtagat 16972756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 17766119 - 17766014
Alignment:
Q  385 aaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgta 484  Q
    |||||| |||||||| | |||||| |||||||||||||||||| ||| ||| |||||||| |||   | |||||||||| | ||| |||| |||||| ||    
T  17766119 aaccttttataaattggcgtgttttgttcatttgcaaaccacaacacgaaaccatgaacacttactaaatagatatgaagattaagctagttgcagttta 17766020  T
Q  485 ctacaa 490  Q
    ||||||    
T  17766019 ctacaa 17766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 11883587 - 11883532
Alignment:
Q  420 aaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactaga 475  Q
    |||||||| |||||||||||||||| ||||||||||||| | ||||| ||||||||    
T  11883587 aaaccacaccacaaaatcatgaacacttatccagtagatgtaaacaccaaactaga 11883532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 25578156 - 25578070
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaaca 465  Q
    ||||||||| || ||||||||  |||||||||||||||||||  ||| | ||| ||| |||||||| ||||||| |||| |||||||    
T  25578156 gcacaaaactttttataaattaatgtgtttggttcatttgcactccataccactaaaccatgaacatttatccattagaaatgaaca 25578070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 18825743 - 18825811
Alignment:
Q  406 tttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactag 474  Q
    |||||||||||||||||| ||| |||| || ||||||||  ||| | ||||||||||||||||| ||||    
T  18825743 tttggttcatttgcaaacaacaccacataaccatgaacacgtataccgtagatatgaacactaagctag 18825811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 27059415 - 27059455
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgtttggttcatttgc 419  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  27059415 gcacaaaaacttctataaattggtgtgtttggttcatttgc 27059455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 418
Target Start/End: Complemental strand, 56335582 - 56335552
Alignment:
Q  388 cttctataaatttgtgtgtttggttcatttg 418  Q
    |||||||||||||||||||||||||||||||    
T  56335582 cttctataaatttgtgtgtttggttcatttg 56335552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 26719608 - 26719704
Alignment:
Q  395 aaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaat 491  Q
    ||||| ||||||||||||||||| |||| ||| ||| | || | |||||| ||||| |||||||||||||||||| |||| || ||| |||||||||    
T  26719608 aaattggtgtgtttggttcattttcaaatcacgtcatagaaccttgaacacttatctagtagatatgaacactaagctagttgtagtttactacaat 26719704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 494
Target Start/End: Original strand, 36599445 - 36599559
Alignment:
Q  380 cacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgca 479  Q
    |||||||| |||||||||||||||||||   ||||||||| ||||||  |||| || |  ||||| |||| || |||||||||| ||||| |||| ||||    
T  36599445 cacaaaacattctataaatttgtgtgttcaattcatttgctaaccacgccacataaccgagaacacttattcattagatatgaatactaagctaggtgca 36599544  T
Q  480 gtgtactacaatatg 494  Q
     || |||||||||||    
T  36599545 atgaactacaatatg 36599559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 492
Target Start/End: Original strand, 30603468 - 30603581
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgc 478  Q
    ||||| || |||||||||||| |||||||| ||||||||| || ||||| || |||  ||||||||  |||| ||||||| ||||||| || ||||   |    
T  30603468 gcacataaacttctataaattagtgtgttttgttcatttgtaatccacaccataaatacatgaacacgtatctagtagatgtgaacacgaacctagccac 30603567  T
Q  479 agtgtactacaata 492  Q
    | ||||||||||||    
T  30603568 attgtactacaata 30603581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 492
Target Start/End: Complemental strand, 33426082 - 33425978
Alignment:
Q  388 cttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtacta 487  Q
    |||||||||||| |||||||| ||||||||   |||||||  ||||||||||||||| |||| ||||| || |||| || ||  ||  |||||| |||||    
T  33426082 cttctataaattggtgtgtttcgttcatttaagaaccacacaacaaaatcatgaacacttattcagtaaatctgaataccaagttaactgcagtttacta 33425983  T
Q  488 caata 492  Q
    |||||    
T  33425982 caata 33425978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 40965055 - 40964995
Alignment:
Q  380 cacaaaaccttctataaatttgtgtgtttggttcatttgcaaa-ccacatcacaaaatcat 439  Q
    |||||||||||||||||||| |||||||| ||||| |||||||  |||| |||||||||||    
T  40965055 cacaaaaccttctataaattggtgtgtttagttcaattgcaaatacacaccacaaaatcat 40964995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 492
Target Start/End: Original strand, 1216 - 1319
Alignment:
Q  389 ttctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtactac 488  Q
    |||||||||||   ||||||| |||||||| ||| ||||||| | ||||||||||| |||| || |||||||||| | ||| |||| || ||| ||||||    
T  1216 ttctataaattgacgtgtttgattcatttgaaaagcacatcatagaatcatgaacacttattcaatagatatgaataataagctagttgtagtttactac 1315  T
Q  489 aata 492  Q
    ||||    
T  1316 aata 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 24735544 - 24735465
Alignment:
Q  390 tctataaatttgtgtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaa 469  Q
    |||||||||||   ||||| |||||||||||||||||| |||| ||  ||||||| || | |||||||||||||||||||    
T  24735544 tctataaatttacatgtttagttcatttgcaaaccacaccacataacaatgaacacttgttcagtagatatgaacactaa 24735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 491
Target Start/End: Complemental strand, 2287697 - 2287609
Alignment:
Q  403 gtgtttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaat 491  Q
    |||||||||||||||||||| |||| |  | || |||||||| ||||| ||||||| | ||||| |  ||||  |||||||||||||||    
T  2287697 gtgtttggttcatttgcaaaacacaacgaagaaacatgaacacttatctagtagatgtaaacaccacgctagtagcagtgtactacaat 2287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 10705 - 10659
Alignment:
Q  377 atgcacaaaaccttctataaatttgtgtgtttggttcatttgcaaac 423  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  10705 atgcacaaagccttctataaatttgcgtgtttcgttcatttgcaaac 10659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 9437512 - 9437432
Alignment:
Q  379 gcacaaaaccttctataaatttgtgtgt-ttggttcatttgcaaaccacatcacaaaatcatgaacaattatccagtagat 458  Q
    |||||||| ||| |||||||| |  ||| |||||||||||| |||||||| |||||||   |||||||||||| |||||||    
T  9437512 gcacaaaaacttgtataaattggcttgtgttggttcatttgaaaaccacaccacaaaacggtgaacaattatctagtagat 9437432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University