View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_1 (Length: 353)
Name: NF1532_low_1
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 35912163 - 35911838
Alignment:
| Q |
11 |
attctagaaaaacggaaacaagaacaatccattacctggtcggtcagccggctgaccaatgcatggtcattggtcaacagtactgttaactctcttattt |
110 |
Q |
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| T |
35912163 |
attctagaaaaacggaaacaagaacaatccattacctggtcggtcagccggctgaccaatgcatggtcattggtcaacagtactgttaactctcttattt |
35912064 |
T |
|
| Q |
111 |
ctttcacatggctccaacaagcacaaccaaataagtcc-tacaaaattgccactgtttttcatctataaatagttagaaacttatgatatattgaaacca |
209 |
Q |
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| T |
35912063 |
ctttcacatgattcaaacaagcacaaccaaataagtccctgcaaaattgccactgtttttcatctataaatagttagaaacttatgatatattgaagcca |
35911964 |
T |
|
| Q |
210 |
agttgagaacaagatgaagaagttttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagcagat |
309 |
Q |
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| T |
35911963 |
agttgagaacaagatgaagaaggtttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagctgat |
35911864 |
T |
|
| Q |
310 |
aaacttgttgagtttattctgtctag |
335 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35911863 |
aaacttgttgagtttattctgtctag |
35911838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 100 - 335
Target Start/End: Complemental strand, 35916463 - 35916225
Alignment:
| Q |
100 |
ctctcttatttctttcacatggctccaacaagcacaaccaaataagtcctacaaaattgccactgtttttcatctataaatagttagaaacttatgatat |
199 |
Q |
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| T |
35916463 |
ctctcttgtttctttcacatggctccaacaagaacaaccaaataagtccttcaaaattgtcaatgtttttcatctataaatagttagaaacttatgatat |
35916364 |
T |
|
| Q |
200 |
attgaaaccaagttgagaacaagatgaagaagttttctctttatgcttgtttactactcaacttg---agtctattggttatttttccatattgcaaagc |
296 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||| ||||||| |
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| T |
35916363 |
attgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagc |
35916264 |
T |
|
| Q |
297 |
tagtcaagcagataaacttgttgagtttattctgtctag |
335 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||| |
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| T |
35916263 |
tagtcaagctgataaactcaatgagtttattctgtctag |
35916225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 54 - 335
Target Start/End: Complemental strand, 35922774 - 35922494
Alignment:
| Q |
54 |
tcagccggctgaccaat---gcatggtcattggtcaacagtactgttaactctcttatttctttcacatggctccaacaagcacaaccaaataagtccta |
150 |
Q |
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|||||||||||| |||| |||| |||||||||||| ||||||||||| || | |||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
35922774 |
tcagccggctgatcaatattgcatagtcattggtcaattgtactgttaacact--tgtttcattcacatgactccaataagcacaaccaaataagtcctc |
35922677 |
T |
|
| Q |
151 |
caaaattgccactgtttttcatctataaatagttagaaacttatgatatattgaaaccaagttgagaacaagatgaagaagttttctctttatgcttgtt |
250 |
Q |
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| T |
35922676 |
caaaattgtcact--ttttcatctataaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtt |
35922579 |
T |
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| Q |
251 |
tactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagcagataaacttgttgagtttattctgtctag |
335 |
Q |
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|| ||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
35922578 |
tattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctag |
35922494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 101 - 335
Target Start/End: Complemental strand, 35929396 - 35929166
Alignment:
| Q |
101 |
tctcttatttctttcacatggctccaacaagcacaaccaaataagtcctacaaaattgccactgtttttcatctataaatagttagaaacttatgatata |
200 |
Q |
| |
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|||||| ||||||||||||| ||||||| |||||| ||| ||| |||| || | | ||||||||| |||||||||||| |||||||| | |||||| |
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| T |
35929396 |
tctcttgtttctttcacatgcctccaac---cacaacaaaacaagccctaaaatactttcactgttttgtatctataaatagatagaaactaa-gatata |
35929301 |
T |
|
| Q |
201 |
ttgaaaccaagttgagaacaagatgaagaagttttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagt |
300 |
Q |
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| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||||||| |
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| T |
35929300 |
tggaaaccaagttgagaataagatgaagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagt |
35929201 |
T |
|
| Q |
301 |
caagcagataaacttgttgagtttattctgtctag |
335 |
Q |
| |
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||| | |||||||||| |||||||||||| ||||| |
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| T |
35929200 |
caaactgataaacttgatgagtttattctttctag |
35929166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 70 - 335
Target Start/End: Complemental strand, 35936076 - 35935809
Alignment:
| Q |
70 |
tgcatggtcattggtcaacagtactgtta--actctcttatttctttcacatggctccaacaagcacaaccaaataagtcctacaaaattgccactgttt |
167 |
Q |
| |
|
|||||||||| | ||||| |||| ||||| || ||||| ||||||||||||| ||||||||| |||| ||| ||||| | ||||||||||||||||| |
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| T |
35936076 |
tgcatggtcagtagtcaatagtaatgttatcacactcttgtttctttcacatg-ctccaacaa---caacaaaacaagtcatgcaaaattgccactgttt |
35935981 |
T |
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| Q |
168 |
ttcatctataaatagttaga-----aacttatgatatattgaaaccaagttgagaacaagatgaagaagttttctctttatgcttgtttactactcaact |
262 |
Q |
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|| ||||||||||||| ||| |||||| ||||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
35935980 |
tttatctataaatagtaagataagaaacttagtatataca-aaaccaacttaagaacaagatgaagaaaatttctctttatgcttgtttattactcaact |
35935882 |
T |
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| Q |
263 |
tgagtctattggttatttttccatattgcaaagctagtcaagcagataaacttgttgagtttattctgtctag |
335 |
Q |
| |
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||||||| |||||||||||||| ||| |||||||||||||||| |||||||||| |||| || |||||||||| |
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| T |
35935881 |
tgagtctcttggttatttttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtctag |
35935809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 35941510 - 35941359
Alignment:
| Q |
184 |
tagaaacttatgatatattgaaaccaagttgagaacaagatgaagaagttttctctttatgcttgtttactactcaacttgagtctattggttatttttc |
283 |
Q |
| |
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|||||||||| ||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
35941510 |
tagaaacttagcttatatagaaatcaagttgagaacaagatggagaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttc |
35941411 |
T |
|
| Q |
284 |
catattgcaaagctagtcaagcagataaacttgttgagtttattctgtctag |
335 |
Q |
| |
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||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
35941410 |
catatagcaaagctagtcaagctgataaactcaatgagtttattctgtctag |
35941359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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