View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_10 (Length: 595)

Name: NF1532_low_10
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_10
NF1532_low_10
[»] chr6 (10 HSPs)
chr6 (100-585)||(6457428-6457913)
chr6 (330-511)||(6515816-6515997)
chr6 (331-463)||(6496956-6497088)
chr6 (196-461)||(6472808-6473070)
chr6 (394-511)||(6505829-6505946)
chr6 (371-463)||(6461584-6461676)
chr6 (367-462)||(6520331-6520426)
chr6 (334-563)||(6465619-6465851)
chr6 (196-455)||(13035513-13035769)
chr6 (207-257)||(6516070-6516120)
[»] chr7 (2 HSPs)
chr7 (208-278)||(9665244-9665314)
chr7 (367-473)||(4046551-4046657)
[»] chr4 (1 HSPs)
chr4 (208-278)||(13536268-13536338)


Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 100 - 585
Target Start/End: Original strand, 6457428 - 6457913
Alignment:
Q  100 tttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtctccttcaagaactttttgatcgctggtatggaatcgaggt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  6457428 tttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtttccttcaagaactttttgatcgctggtatggaatcgagat 6457527  T
Q  200 cattcacttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgtcgttattcctaaggaacttag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457528 cattcacttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgtcgttattcctaaggaacttag 6457627  T
Q  300 agcatccacatcgccagaaagtgctgaacaaatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457628 agcatccacatcgccagaaagtgctgaacaaatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttc 6457727  T
Q  400 aataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457728 aataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaa 6457827  T
Q  500 gttgaagatgaactggatgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatctgtg 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6457828 gttgaagatgaactggatgagcaagcatcaacaactctccccaccctttcttctcccatttatattcgacgctgaatggatttgtg 6457913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 511
Target Start/End: Complemental strand, 6515997 - 6515816
Alignment:
Q  330 aatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaaca 429  Q
    ||||||||||||  ||||||| || ||||||||| | |||||||| || |||||||  ||||  |||||||| | |||||| || |||||||||||||||    
T  6515997 aatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttacagaaatcggatcggttttcaaaatccatgaatcaccaacaacaccaaca 6515898  T
Q  430 agctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcagacaaaagttgaagatgaa 511  Q
    || || || ||||||||||||||||| |||||||  |  |||||||||||||  | ||||  ||| |||||||||| |||||    
T  6515897 aggtctccatcaatgctttgatacttgaaatcatccaaaacagttacatcacttttacttttagataaaagttgaatatgaa 6515816  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 331 - 463
Target Start/End: Original strand, 6496956 - 6497088
Alignment:
Q  331 atttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaa 430  Q
    ||||||||| || ||||||  || | ||| ||||| ||| ||||||||||| ||||||||| ||||| ||| | |||||| || ||||||||||||||||    
T  6496956 atttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaa 6497055  T
Q  431 gctcgccgtcaatgctttgatacttcaaatcat 463  Q
    | || || ||||||||||||||||| |||||||    
T  6497056 ggtctccatcaatgctttgatacttaaaatcat 6497088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 196 - 461
Target Start/End: Complemental strand, 6473070 - 6472808
Alignment:
Q  196 aggtcattcacttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgtcgttattcctaaggaac 295  Q
    |||| |||||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| ||   ||||| || ||| |||||   | | ||      
T  6473070 aggtaattcacctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagta---agatgatgctgttgttatcggtgatgact 6472974  T
Q  296 ttagagcatccacatcgccagaaagtgctgaacaaatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagt 395  Q
    |||||   || |||||    ||||| ||||||  |||||| |||||  ||||||| || | ||||||| | |||||||| |||| |||||||||||  ||    
T  6472973 ttagactctcaacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgt 6472874  T
Q  396 tttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatc 461  Q
    |||||| | |||||| || |||||||| |||||||| || || |||||||||| |||||| |||||    
T  6472873 tttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatc 6472808  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 511
Target Start/End: Original strand, 6505829 - 6505946
Alignment:
Q  394 gttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaagcacagttacatcacagtcacttgcag 493  Q
    |||||||| | |||||| || ||||||||||||||||| || || |||||||||  |||||| ||||||| ||| |||||||||||||  ||||||   |    
T  6505829 gttttcaaaatccatgaatcaccaacaacaccaacaaggtcaccatcaatgcttgtatacttgaaatcatcaagaacagttacatcactctcactttttg 6505928  T
Q  494 acaaaagttgaagatgaa 511  Q
    ||| ||||||||||||||    
T  6505929 acagaagttgaagatgaa 6505946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 463
Target Start/End: Complemental strand, 6461676 - 6461584
Alignment:
Q  371 gccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcat 463  Q
    |||||||||||  |||||||| ||||| ||| | |||||| || ||||||||||||||||| || || ||||||||||||||||| |||||||    
T  6461676 gccatgtaacatcaacaggatcagtttccaaaagccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatcat 6461584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 367 - 462
Target Start/End: Complemental strand, 6520426 - 6520331
Alignment:
Q  367 gaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatca 462  Q
    |||||||| || ||||||||||||| ||||||||| |||||||| || ||||  ||||||||||| || || |||||||||| |||||| ||||||    
T  6520426 gaatgccaagttacagaaacaggatcagttttcaaaaaccatgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatca 6520331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 563
Target Start/End: Original strand, 6465619 - 6465851
Alignment:
Q  334 tcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagct 433  Q
    ||||||||| ||||||| || | ||| || || |||||||| || |||||||| ||||  |||||||| |||||||| || ||||||||||||||||| |    
T  6465619 tcatcatgagattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacaccaacaagat 6465718  T
Q  434 cgccgtcaatgctttgatacttcaaatcatgaagcacagttac---atcacagtcacttgcagacaaaagttgaagatgaactggatgagcaagcatcaa 530  Q
    | || ||||| |||  |||||| |||||||  |  ||||| ||   |||||| |||||  || ||||||| |||| |||||  ||||| || | ||  ||    
T  6465719 caccatcaatacttctatacttaaaatcattcaaaacagtaacattatcacaatcactatcatacaaaagctgaacatgaagaggatgtgctaacaataa 6465818  T
Q  531 caactctccccaccctttcttctcccatttata 563  Q
     || || ||||| ||||||||||||||||||||    
T  6465819 taaatccccccaacctttcttctcccatttata 6465851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 455
Target Start/End: Complemental strand, 13035769 - 13035513
Alignment:
Q  196 aggtcattcacttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgtcgttattcctaaggaac 295  Q
    |||| |||||| ||||||| ||||||| | |||||||| || ||||||||||||||||||||||   || |||||| ||| || |||||   | | ||      
T  13035769 aggtaattcacctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaa---agtaagatgatgtcgttgttatcggtgatgact 13035673  T
Q  296 ttagagcatccacatcgccagaaagtgctgaacaaatttcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagt 395  Q
    ||||| | || |||||    ||||| ||||||  |||||  |||||  ||||||| || | ||||||| | | |||||| || |||||||||| ||  ||    
T  13035672 ttagaccttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgcttgtatgccaagttacagaaacagaatcggt 13035573  T
Q  396 tttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatactt 455  Q
    |||||| | |||||| || |||||||| |||||||| || || |||||||||| ||||||    
T  13035572 tttcaaaagccatgaatcaccaacaactccaacaagttcaccatcaatgcttttatactt 13035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 6516120 - 6516070
Alignment:
Q  207 ttcttcagctatcaatcccaaccttgctgcccttgctatcaattttccata 257  Q
    |||||||||||||||| | ||||||||||| ||||| ||||||| ||||||    
T  6516120 ttcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccata 6516070  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 9665314 - 9665244
Alignment:
Q  208 tcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgt 278  Q
    ||||||||||||||| | | ||| ||||| ||||| ||||||||||||||||| ||  |||||||||||||    
T  9665314 tcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgt 9665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 4046551 - 4046657
Alignment:
Q  367 gaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagctcgccgtcaatgctttgatacttcaaatcatgaa 466  Q
    ||||||||||| |||  ||||| || |||||||||   |||||| | |||||||||||||||||| || || ||||  |||| |||||| ||||||| ||    
T  4046551 gaatgccatgttacattaacagaatcagttttcaaattccatgaatttccaacaacaccaacaagatcaccatcaacacttttatacttaaaatcattaa 4046650  T
Q  467 gcacagt 473  Q
    | |||||    
T  4046651 gaacagt 4046657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 13536338 - 13536268
Alignment:
Q  208 tcttcagctatcaatcccaaccttgctgcccttgctatcaattttccataaaaatagcaagatgttgttgt 278  Q
    ||||||||||||||| | | ||| ||||| ||||| ||||||||||||||||| ||  |||||||||||||    
T  13536338 tcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgt 13536268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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