View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_105 (Length: 265)
Name: NF1532_low_105
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_105 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 6543428 - 6543171
Alignment:
| Q |
8 |
ccaacaaaatcacagatgtgagacaccacttgcatatcagtgctatcttcaaaacaaggttctagattgcagtcaccgtcaaatccagtagatgaccatg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6543428 |
ccaaaaaaatcacagatgtgagacaccacttgcatatcagtgctatcttcaaaacaaggttctagattgcagtcaccgtcaaatccagtagatgaccatg |
6543329 |
T |
|
| Q |
108 |
gtcatgtcgcaaaaacccttgatgtaacttctctcagattgtggttgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttt |
207 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6543328 |
gtcgtgtcgcaaagacccttgatgtaacttctctcagattgtggtcgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttt |
6543229 |
T |
|
| Q |
208 |
tctcttcatacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6543228 |
tctcttcatacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
6543171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 6540900 - 6540797
Alignment:
| Q |
143 |
agattgtggttgccaatctcacggcttaaaatcttttttcaacatcctattggaaacatcttttttctcttcatacaacttcaacagttgagaagcttct |
242 |
Q |
| |
|
|||||||| | || |||||| | ||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6540900 |
agattgtgctcgcgaatctcccagcttaaaatcttttttcaaca-ccaattgaaaacatctattttctcttcatacaacttcaacagctgagaagcttct |
6540802 |
T |
|
| Q |
243 |
tcctc |
247 |
Q |
| |
|
||||| |
|
|
| T |
6540801 |
tcctc |
6540797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 6534488 - 6534422
Alignment:
| Q |
199 |
catcttttttctcttcatacaacttcaacagttgagaagcttcttcctcgtagcaagtcacaaatct |
265 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
6534488 |
catctcttttctcttcatacaacttcaacagctgagatgcttcttcctcaaagcaattcacatatct |
6534422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 6534605 - 6534561
Alignment:
| Q |
35 |
acttgcatatcagtgctatcttcaaaacaaggttctagattgcag |
79 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
6534605 |
acttgcatatctgtgccatcttcaaaacaaggttctaaattgcag |
6534561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University