View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_106 (Length: 262)
Name: NF1532_low_106
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_106 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 20762559 - 20762788
Alignment:
| Q |
30 |
agtattttgttaatatcattgtatgaacgtattaaaaagtttggcatactatattaatgtatagcaataaatatctttaataaaatagttgtaaataaaa |
129 |
Q |
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| T |
20762559 |
agtattttgttaatatcattgtatgaacgtattaaaaagtttggcatactatattaatgtatagcaataaatatgtttaataaaatagttgtaaataaaa |
20762658 |
T |
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| Q |
130 |
acaatgaagtatgcnnnnnnnnnnnctaaaatacacatattagtgtttaattaataaaaccaaaaccaaaatctgtcatagcattcattgatgtttttac |
229 |
Q |
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| T |
20762659 |
accatgaagtatgcaaacaaaaaaaataaaatacacatattagtgt---attaataaaaccaaaaccaaaatctgtcatatcattcattgatgtttttac |
20762755 |
T |
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| Q |
230 |
caaaataagtcaaaaggtgtcttaatattcaaa |
262 |
Q |
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| T |
20762756 |
caaaataagtcaaaaggtgtcttaatattcaaa |
20762788 |
T |
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