View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_107 (Length: 262)
Name: NF1532_low_107
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 46594936 - 46595142
Alignment:
| Q |
27 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46594936 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa |
46595035 |
T |
|
| Q |
127 |
cattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttttgttcaatataacaacaaaat |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46595036 |
cattctgaacaattttggttgaactaaacagagcctccgttctttttaccactttttattctcaaaaataccattg-tttgttcaatataacaacaaaat |
46595134 |
T |
|
| Q |
226 |
ataaaatt |
233 |
Q |
| |
|
| |||||| |
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|
| T |
46595135 |
acaaaatt |
46595142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 4435902 - 4435696
Alignment:
| Q |
27 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4435902 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa |
4435803 |
T |
|
| Q |
127 |
cattctgaacaattttggttgaactaaacagagcctccgttctttttaccac-ttttattctcaaaaataccattgttttgttcaatataacaacaaaat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4435802 |
cattctgaacaattttggttgaactaaacagagtctccgttctttttaccactttttattctcaaaaataccattg-tttgttcaatataacaacaaaat |
4435704 |
T |
|
| Q |
226 |
ataaaatt |
233 |
Q |
| |
|
| |||||| |
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|
| T |
4435703 |
acaaaatt |
4435696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 4092123 - 4091917
Alignment:
| Q |
28 |
cacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaac |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4092123 |
cacattggtaaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaac |
4092024 |
T |
|
| Q |
128 |
attctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttttgttcaatataacaacaaaat |
225 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4092023 |
attcttaacaattttggttgaattaaacagagcctgccgttctttttaccactttttattctcaaaaataccattg-tttgttcaatataacaacaaaat |
4091925 |
T |
|
| Q |
226 |
ataaaatt |
233 |
Q |
| |
|
| |||||| |
|
|
| T |
4091924 |
acaaaatt |
4091917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 47521386 - 47521179
Alignment:
| Q |
27 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaa |
126 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
47521386 |
tcacattggtaaacaaattctaaaaacaatgatatacaacctgtttaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaa |
47521287 |
T |
|
| Q |
127 |
cattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttttgttcaatataacaacaaaa |
224 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
47521286 |
cattcttaacaattttggttgaattaaacagaacctgccgttctttttaccactttttattctcaaaaataccattg-tttgttcaatataacaacaaaa |
47521188 |
T |
|
| Q |
225 |
tataaaatt |
233 |
Q |
| |
|
|| |||||| |
|
|
| T |
47521187 |
tacaaaatt |
47521179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 16960829 - 16961015
Alignment:
| Q |
48 |
aaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcaacattctgaacaattttggttg |
147 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
16960829 |
aaaaacagtgatataaaacctgttaaaacaaaagagattctacattgacaaatgcacctgtcaaaatacatagcttcaacattcttaacaattttggttg |
16960928 |
T |
|
| Q |
148 |
aactaaacagagcct-ccgttctttttaccac-ttttattctcaaaaataccattgttttgttcaatataacaacaaaatataaaatt |
233 |
Q |
| |
|
|| |||||||||| | || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
16960929 |
aattaaacagagcatgccattctttttaccactttttattctcaaaaataccattg-tttgttcaatataacaacaaaatacaaaatt |
16961015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 25869043 - 25868894
Alignment:
| Q |
85 |
ttctacattgacaaatgcatctgtcaaaatacatagcttcaacattctgaacaattttggttgaactaaacagagcct-ccgttctttttaccac-tttt |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||| |||| |
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|
| T |
25869043 |
ttctacattgacaaatgcatctatcaaaatacatagcttcaacattcttaacaattttggttgaattaaacagagcctgcagttctttttaccacttttt |
25868944 |
T |
|
| Q |
183 |
attctcaaaaataccattgttttgttcaatataacaacaaaatataaaatt |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
25868943 |
attctcaaaaataccattg-tttgttcaatataacaacaaaatacaaaatt |
25868894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 26496157 - 26496088
Alignment:
| Q |
36 |
taaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatc |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26496157 |
taaacaaattctaaaaacagtgatatacaacctgttaaaacaaaagagattctacagcaacaaatgcatc |
26496088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 37719256 - 37719392
Alignment:
| Q |
27 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagctt-ca |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
37719256 |
tcacattggtaaacaaattataaaaacagtgatatacaacctgttaaaacaaaagagattctacattgacaaatgcatctgtcaaaatacatagcttcca |
37719355 |
T |
|
| Q |
126 |
acattctgaacaattttggttgaactaaacagagcct |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719356 |
acattctgaacaattttggttgaactaaacagagcct |
37719392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 30440559 - 30440612
Alignment:
| Q |
179 |
ttttattctcaaaaataccattgttttgttcaatataacaacaaaatataaaatt |
233 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
30440559 |
ttttattctaaaaaacaccattgttt-gttcaataaaacaacaaaatacaaaatt |
30440612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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