View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_108 (Length: 261)
Name: NF1532_low_108
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 49684362 - 49684591
Alignment:
| Q |
30 |
ttttctttattgatttatcttgttgtgtggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaaaa |
129 |
Q |
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| T |
49684362 |
ttttctttattgatttatcttgttgtgtggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcgaaa |
49684461 |
T |
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| Q |
130 |
tttatatattagcatattccttaactatgttttctccaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtacta |
229 |
Q |
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| T |
49684462 |
tttacatattagcatattccttaactatgttttctctaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtacta |
49684561 |
T |
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| Q |
230 |
cattatcaaattttatttcagttcattctc |
259 |
Q |
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| T |
49684562 |
cattatcaaattttatttcagttcattctc |
49684591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 20059441 - 20059584
Alignment:
| Q |
30 |
ttttctttattgatttatcttgttgtgt--ggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaa |
127 |
Q |
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| T |
20059441 |
ttttctttattgatttaactttttttgtatggatgcaggtttctgactaataattctttga-----atggaccgattcaagactggatactgaacttcaa |
20059535 |
T |
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| Q |
128 |
aatttatatattagcata-ttccttaactatgttttctccaattgcata |
175 |
Q |
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| T |
20059536 |
aattaacatgttagcatatttcacttaccatgctttctccaattgcata |
20059584 |
T |
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