View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_11 (Length: 556)
Name: NF1532_low_11
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 3984252 - 3984052
Alignment:
| Q |
144 |
aaaattaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaa |
243 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3984252 |
aaaattaaggtatcattgtttatatttgaatacttttttaacggatttgatttcttagttttaaaaataatgacagtataaaggagaagatgaataagaa |
3984153 |
T |
|
| Q |
244 |
gacaatcaaaacaaataataata------------atgttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattga |
331 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3984152 |
gagaatcaaaacaaataataataatgtaatatattatgttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattga |
3984053 |
T |
|
| Q |
332 |
t |
332 |
Q |
| |
|
| |
|
|
| T |
3984052 |
t |
3984052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 350 - 501
Target Start/End: Complemental strand, 3983997 - 3983845
Alignment:
| Q |
350 |
ttacagatatctcattcttcaatccctttaattgtgcctttctcaatgaattatgggtcttggg-ccggagcatttgtcggagatccaagtggaccattc |
448 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||| |||||||| |||||| ||| |||||||| ||||| |
|
|
| T |
3983997 |
ttacaaatatctcattcttcaatccctttaatcgtacctttctcaattaattgtgggtcttgggaccggagcacctgtcggtgattcaagtggatcattc |
3983898 |
T |
|
| Q |
449 |
ttcattgtgccgccttttacttccattacactagcagctagcataataaacat |
501 |
Q |
| |
|
||| ||| |||||||| ||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
3983897 |
ttccttgagccgccttctacgtccattaaagtagcagctagcataataaacat |
3983845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 3984330 - 3984279
Alignment:
| Q |
15 |
ggtgtgatactcagctcactgagtattctttgtgtgatgatgatgattgtat |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3984330 |
ggtgtgatactcagctcactgagtattctttgtgtgatgataatgattgtat |
3984279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 332
Target Start/End: Original strand, 741311 - 741502
Alignment:
| Q |
147 |
attaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaagac |
246 |
Q |
| |
|
||||||||| |||||||| | |||||||| |||||| |||||||||||| || |||||||||| ||||| ||||||||| |||||| |||| |||| |
|
|
| T |
741311 |
attaaggtaagattgtttacaattgaatacacttttaacggatttgatttcttaattttaaaaattgtgacaatataaaggacaagatggataaaaagag |
741410 |
T |
|
| Q |
247 |
aatcaaaacaaataataataatg-------ttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattgat |
332 |
Q |
| |
|
||||||| || ||| ||||||| ||||| |||||||| ||||||| ||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
741411 |
gatcaaaataattaa-aataatgtgatttattatgataacaaatgacaaggaaggggaagaggatggggatgagggcatgagttgatattgat |
741502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 329
Target Start/End: Complemental strand, 797579 - 797388
Alignment:
| Q |
144 |
aaaattaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaa |
243 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| ||||||| | |||||||||| || ||| |||||| ||||| ||||||| |||||||| |||| || |
|
|
| T |
797579 |
aaaattaaggtttgattgtttatcattgaatacatttttaacgtatttgatttcctaatttaaaaaattgtgacaatataaagaagaagatggataaaaa |
797480 |
T |
|
| Q |
244 |
gacaatcaaaacaaataataataatg-------ttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatatt |
329 |
Q |
| |
|
|| ||||||| ||||| ||||||| ||||||||| |||| ||||||| ||||||| || |||||||| ||||||||||||||| |
|
|
| T |
797479 |
gaggatcaaaa-taataaaaataatgtgatttattatggtaataaatgacaaggaaggggaagaggttggggatgacgacatgagttgatatt |
797388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 797265 - 797211
Alignment:
| Q |
417 |
gagcatttgtcggagatccaagtggaccattcttcattgtgccgccttttacttc |
471 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
797265 |
gagcacttgttggagattcaagtggaccattcttccttgaaccgccttttacttc |
797211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University