View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_111 (Length: 252)
Name: NF1532_low_111
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 6885097 - 6885248
Alignment:
| Q |
94 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagattaggcctcaaaatatcatttgggctaacgagaaaaatatctccaaggta |
193 |
Q |
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| T |
6885097 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagattaggcctcaaaatatcatttgggctaacgagaaaaatatctccaaggta |
6885196 |
T |
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| Q |
194 |
caagtgattggtgggaatataaacacaataaagctcttcttcatctctgctc |
245 |
Q |
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| T |
6885197 |
caggtgattggtgggaatataaacacaataaagctcttcttcatctctgctc |
6885248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6885051 - 6885086
Alignment:
| Q |
1 |
taaccagatataacaattttaatacaaaagttttgt |
36 |
Q |
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| T |
6885051 |
taaccagatataacaattttaatacaaaagttttgt |
6885086 |
T |
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