View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_114 (Length: 251)
Name: NF1532_low_114
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_114 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 46769154 - 46769383
Alignment:
| Q |
32 |
tataattatgctataatttacaatcaagtccattaaatt----------actaacacatgcatgggtggcatctgatgtggcttagttcttatctaattt |
121 |
Q |
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| T |
46769154 |
tataattatgctataatttacaatcaagtccattcaattccattcaactactaacacatgcatgggtggcatctgatgtggcttagttcttatctaattt |
46769253 |
T |
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| Q |
122 |
aaatcaaacaacaactttgacacattgtctaactttatgtcacagctatacaatgtgtcgagtataaaacagataaatcaaaagaggcatggctgttata |
221 |
Q |
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| T |
46769254 |
aaatcaaacaacaactttgacacattgtctaactttatgtcacagctatacaatgtgtcgagtataaaacagataaatcaaaagaggcatggctgttata |
46769353 |
T |
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| Q |
222 |
ttcctggtctaaactgcaatatataaaaga |
251 |
Q |
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| T |
46769354 |
ttcctggtctaaactgcaatatataaaaga |
46769383 |
T |
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