View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_115 (Length: 251)
Name: NF1532_low_115
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 7220884 - 7220804
Alignment:
| Q |
156 |
cttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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| T |
7220884 |
cttcatgacttaaattagtccattaatttcattcttctttcaccttggtaaggtagacgagataagcttgcccgtttgtag |
7220804 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 5102022 - 5102095
Alignment:
| Q |
163 |
atttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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| T |
5102022 |
atttaaattagcttagtaacttcattcttctttcacctcggtaaggtagatgagatagggttgctcgtttgtag |
5102095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 8038242 - 8038181
Alignment:
| Q |
176 |
tggtaatttcattcttctttcacctt-ggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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| T |
8038242 |
tggtaactttattcttctttcatctttggtaatgtagacgagacagggttgcccgtttgtag |
8038181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 20175244 - 20175175
Alignment:
| Q |
168 |
aattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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| T |
20175244 |
aattagcctagtaacttcattcttctttcatccttggtaaggtagacgagatggggttgtccgtttgtag |
20175175 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 10504298 - 10504215
Alignment:
| Q |
154 |
tacttcatgatttaaattagtctggtaatttcattcttctttcacc-ttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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|||||||||| |||||| |||| |||| ||| ||||||||||| | ||||||| |||||||||||| |||||||| ||||||| |
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| T |
10504298 |
tacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacgagatagggttgcccctttgtag |
10504215 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 24119143 - 24119224
Alignment:
| Q |
156 |
cttcatgatttaaattagtctggtaatttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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||||||||||||||| || || |||| ||| | |||||||| || |||||| |||||||||||| |||||||||||||||| |
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| T |
24119143 |
cttcatgatttaaatcagcctagtaacttcgattttctttcatccctggtaaggtagacgagatagggttgcccgtttgtag |
24119224 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 25939810 - 25939751
Alignment:
| Q |
155 |
acttcatgatttaaattagtctggtaatttcattcttctttcaccttggtaatgtagacg |
214 |
Q |
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| T |
25939810 |
acttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacg |
25939751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 12590308 - 12590364
Alignment:
| Q |
179 |
taatttcattcttctttcaccttggtaatgtagacgagataaggttgcccgtttgtag |
236 |
Q |
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|||||| |||||| |||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
12590308 |
taattttattctt-tttcccctttataaggtagacgagataaggttgcccgtttgtag |
12590364 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 17830785 - 17830733
Alignment:
| Q |
183 |
ttcattcttctttca-ccttggtaatgtagacgagataaggttgcccgtttgt |
234 |
Q |
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||||||||||||||| || |||| | |||||||||||| |||||||||||||| |
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| T |
17830785 |
ttcattcttctttcatccgtggtgaggtagacgagatatggttgcccgtttgt |
17830733 |
T |
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