View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_116 (Length: 250)
Name: NF1532_low_116
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_116 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2616506 - 2616747
Alignment:
| Q |
8 |
caccacagacaataaagaccatccccatccaacgacactcatcttctagacaagtttcttgagtaggaagccttccaaaaattaattgtcaactcataaa |
107 |
Q |
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| T |
2616506 |
caccacacacaataa-gaccatccccatccaacgacactcatcttctagacaagtttcttaagtaggaagccttccaaaaattaattgtcaactcataaa |
2616604 |
T |
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| Q |
108 |
ttcctagtttcatagtggtccaaagttctaaacttgtaggaataagagataaaagatgcctcggtccctnnnnnnngttgccaagaaatttaattaaagt |
207 |
Q |
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| T |
2616605 |
ttcctagtttcatagtggtccaaagttctaaacttgtaggaataagagataaaagatgcctcggtccctaaaaaaagttgccaagaaatttaattaaagt |
2616704 |
T |
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| Q |
208 |
ggatgtcaaatgctctagtttaagtgaattagaagaaaaatac |
250 |
Q |
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| T |
2616705 |
ggatgtcaaatgctctagtcgcagtgaattagaagaaaaatac |
2616747 |
T |
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