View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_117 (Length: 239)
Name: NF1532_low_117
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20762895 - 20763120
Alignment:
| Q |
1 |
ctttaggacatttttcctcgacctctgtctcttcgtttttcacgttgatattaatcgtttttaaaacagttacattgcagataagaaagtgaagcattaa |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20762895 |
ctttaggacatttttcctcgacctcagtctcttcgtttttcacattgatattaatcgtttttaaaacagtcacattgcagataagaaagtgaagcattaa |
20762994 |
T |
|
| Q |
101 |
aatcacattcacagctccagtaaagttattcatctctaccaccttcaaggttgatgtcaagcattgacaactatttccattgtttaaccaagttctctta |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20762995 |
aatcacattcacagctccagtaaacttattcatctctaccaccttcaaggttgatgtcaagcattgacaactatttccattgtttaaccaagttctctta |
20763094 |
T |
|
| Q |
201 |
tgatcaccatcaacttctttgtagta |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
20763095 |
tgatcaccatcaacttctttgtagta |
20763120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16151459 - 16151684
Alignment:
| Q |
1 |
ctttaggacatttttcctcgacctctgtctcttcgtttttcacgttgatattaatcgtttttaaaacagttacattgcagataagaaagtgaagcattaa |
100 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||||| |||| || |||||||||| | || |||||||||| ||||||| |||||||||||||||||||| |
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| T |
16151459 |
ctttacgacatttttccaccacctcagtctcttcattttgtacattgatattaacccttcttaaaacagtcccattgcaaataagaaagtgaagcattaa |
16151558 |
T |
|
| Q |
101 |
aatcacattcacagctccagtaaagttattcatctctaccaccttcaaggttgatgtcaagcattgacaactatttccattgtttaaccaagttctctta |
200 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
16151559 |
aatctcattcacaaatccagtaaagttattcatctctaccaccttcaaggttgatgtcaagcattcacaactatttccattgtctaaccaagttctctta |
16151658 |
T |
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| Q |
201 |
tgatcaccatcaacttctttgtagta |
226 |
Q |
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|||||| ||||| ||||||||||||| |
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| T |
16151659 |
tgatcatcatcatcttctttgtagta |
16151684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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