View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_121 (Length: 214)
Name: NF1532_low_121
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_121 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 40865103 - 40865027
Alignment:
| Q |
60 |
tatcacagttagaatctcaattgaaagatattaatctcccaaaacaatacgcttcttctgcttctgctgcatcatcc |
136 |
Q |
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| T |
40865103 |
tatcacagttagaatctcaattgaaagatattaatctcccaaaacaacacgcttcttctgcttctgctgcatcatcc |
40865027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40865162 - 40865128
Alignment:
| Q |
1 |
agagattcttcaagaacttgaatcactgaagagcg |
35 |
Q |
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| T |
40865162 |
agagattcttcaagaacttgaatcactgaagagcg |
40865128 |
T |
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