View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_20 (Length: 519)
Name: NF1532_low_20
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 7417035 - 7417500
Alignment:
| Q |
10 |
gtagtatcataggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatt |
109 |
Q |
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| T |
7417035 |
gtagcatcatgggttttgaggaatgatttggctagttctacggtggcgcccacaatgacgggtttcgagccgaaatatagatgcatgatgggtccatatt |
7417134 |
T |
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| Q |
110 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
209 |
Q |
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| T |
7417135 |
tttgagtgaggccatggagggattgatgtgggagggatccgataaggttgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
7417234 |
T |
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| Q |
210 |
gtggcggcggaggcggcggctgaagaggaggaggatgacaaatgttgcaaacaatgtgacccaactaggaagttccaataattgcactggcgccataatt |
309 |
Q |
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| T |
7417235 |
gtggcggcggaggcggcggctgaagaggaggaggatgacaaatgttgcaaacaatgtgacccaactaggaagttccaataattgcactggctccataatt |
7417334 |
T |
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| Q |
310 |
ggtcgattttgtgactttcttttggtgtgaaatt--agagggttgtgtgagtgagtttgaagggtgtgtgtgggtcattatttatatatgcatgtgatag |
407 |
Q |
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| T |
7417335 |
ggtcgattttgtgactttcttttggtgtgaaattagagagggttatgtgagtgagtttgaagggtgtgtgtgggtcattatt--tatatgcatgtgatag |
7417432 |
T |
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| Q |
408 |
tgagaaagcaatagctcgaggacccacatgaggttcaacaaactttccatcaatacacatgtttcttg |
475 |
Q |
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| T |
7417433 |
tgagaaagcaatagctcgaggacccacatgaggttcaacaaactttccatcaatacacatgtttcttg |
7417500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 57 - 292
Target Start/End: Original strand, 7432057 - 7432298
Alignment:
| Q |
57 |
gcccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatttttgagtgaggccatggagggattgatgtgggagggatccgataagg |
156 |
Q |
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| T |
7432057 |
gcccacaatgacgagtttggatccgaaccatagacgcatgatggggccatattttttagtgagcccatggatggattgatgtgggagggatccgataagg |
7432156 |
T |
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| Q |
157 |
ttgagatttccaattataggccatggttttgggcctggtggtagattgtatttg------tggcggcggaggcggcggctgaagaggaggaggatgacaa |
250 |
Q |
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| T |
7432157 |
ttcatatttcctattataggccatggttttggtcctggtggtagattgtatttgcggcgatggagacgaagacggtggatgaataggagaaggatgacaa |
7432256 |
T |
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| Q |
251 |
atgttgcaaacaatgtgacccaactaggaagttccaataatt |
292 |
Q |
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| T |
7432257 |
atgttgtacaaaatgtaacccaattaggaagtacaaataatt |
7432298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 7426069 - 7426220
Alignment:
| Q |
58 |
cccacaatgacgggtttcgagccgaaatatagatgtatgatgggtccatatttttgagtgaggccatggagggattgatgtgggagggatccgataaggt |
157 |
Q |
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| T |
7426069 |
cccacaatgacaggtttagagccgaaccataaatgcatgatgggtccatattttttagtgagcccgtggagggattgatgtggaagtgatccaataagat |
7426168 |
T |
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| Q |
158 |
tgagatttccaattataggccatggttttgggcctggtggtagattgtattt |
209 |
Q |
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| T |
7426169 |
tgagatttcctattatgggccatgattttgggccaggtggtagattgtattt |
7426220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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