View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_21 (Length: 503)
Name: NF1532_low_21
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 27569688 - 27569845
Alignment:
| Q |
111 |
tgtgagaaaatgacacttgagagaagaaaaaggactatagtatactctatagagagatagagggtgtagggtagtatagggagaaaagtggttaatatta |
210 |
Q |
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| T |
27569688 |
tgtgagaaaatgacacttgagagaagaaaaaggactatagtatactctatagagagatagagggtgtagggtagtatagggagaaaagtggttaatatta |
27569787 |
T |
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| Q |
211 |
tatgaaaggatgtgaaattataagataaagaggggaacaaaagaaaaaggtaaataag |
268 |
Q |
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| T |
27569788 |
tatgaaaggatgtgaaattataagataaagaggggaacaaaagaaaaaggtaaataag |
27569845 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 27569901 - 27569983
Alignment:
| Q |
324 |
ggagtaaaaaattggaaaagtgaagnnnnnnntttgtaagctttaacgtgtgcattgtgtgtgtccttctgcaacgaattctt |
406 |
Q |
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| T |
27569901 |
ggagtaaaaaattggaaaagtgaagaaaaaaatttgtaagctttaacgtgtgcattgtgtgtgtccttctgcaacgaattctt |
27569983 |
T |
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