View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_24 (Length: 492)
Name: NF1532_low_24
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_24 |
 | |
|
| [»] scaffold1819 (2 HSPs) |
| | |
|
| [»] scaffold1104 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold1819 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 112 - 481
Target Start/End: Complemental strand, 1136 - 758
Alignment:
| Q |
112 |
atcacctttctttggtctgtattttttcttcgcgcatttgattcttcctcttttatagataagttgtaattcnnnnnnnn-------tctttagaaaaga |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1136 |
atcacctttctttggtctatattttttcttcgcgcatttgattcttcctcttttatagataagttgtaattaaaaaaaaaaaaaaaatctttagaaaaga |
1037 |
T |
|
| Q |
205 |
ttcataagacatttaatttgagttttctcacttatatgttgttcaacttcaacatttcatttatttcgaaaattttgacactataaagttttatgggctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036 |
ttcataagacatttaatttgagttttctcacttatatgctgttcaatttcaacatttcattcatttcgaaaattttgacactataaagttttatgggctc |
937 |
T |
|
| Q |
305 |
tatagaacac--cattaatacggccaaagaggagataattaaaagagttataaagccacaagaatcttatatccctttctctatcattgctaattcttct |
402 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
936 |
tagagaacacaccattaatacggccaaagaggagataattaaaagagttataaagccacaaatatctcctatccctttctctatcactgctaattcttct |
837 |
T |
|
| Q |
403 |
actagagaagaaggaacaagtggaacacgaggctgcaatgtgtatgcatgcaaaacatgcaacaaaactttcacttcat |
481 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
836 |
actagagaggaaggaacaagtggaacaccaggttgcaatgtgtatgcatgcaaaacatgtaaaaaaacttttacttcat |
758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 199 - 487
Target Start/End: Original strand, 171 - 455
Alignment:
| Q |
199 |
aaaagattcataagacatttaatttgagttttctcacttatatgttgttcaacttcaacatttcatttatttcgaaaattttgacactataaagttttat |
298 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||| | || |||||| | |||||| |||||| |
|
|
| T |
171 |
aaaagatccttaagacatttaatttgagtcatctcacttatatgttattcaacttcaacttttcattcattttggaacttttgagattataaaattttat |
270 |
T |
|
| Q |
299 |
gggctctatagaaca--ccattaatacggccaaagaggagataattaaaagagttataaagccacaagaatcttatatccctttctctatcattgctaat |
396 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||| |||| |||||||||||| ||| ||| |
|
|
| T |
271 |
gggctctagagaacacgccattaatatggccaaggaggagataattaaaagagttataaaatcaccacaatcttctatctctttctctatcactgccaat |
370 |
T |
|
| Q |
397 |
tcttctactagagaagaaggaacaagtggaacacgaggctgcaatgtgtatgcatgcaaaacatgcaacaaaactttcacttcatctcact |
487 |
Q |
| |
|
|||| |||||| || |||||||| || | |||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
371 |
tctt------gagaaggagaaacaagtgaaagagcaggctgcaatgtgtatgcatccaaaacatgtaacaaaactttcatttcatttcact |
455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 112 - 481
Target Start/End: Complemental strand, 2658 - 2280
Alignment:
| Q |
112 |
atcacctttctttggtctgtattttttcttcgcgcatttgattcttcctcttttatagataagttgtaattcnnnnnnnn-------tctttagaaaaga |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2658 |
atcacctttctttggtctatattttttcttcgcgcatttgattcttcctcttttatagataagttgtaattaaaaaaaaaaaaaaaatctttagaaaaga |
2559 |
T |
|
| Q |
205 |
ttcataagacatttaatttgagttttctcacttatatgttgttcaacttcaacatttcatttatttcgaaaattttgacactataaagttttatgggctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2558 |
ttcataagacatttaatttgagttttctcacttatatgctgttcaatttcaacatttcattcatttcgaaaattttgacactataaagttttatgggctc |
2459 |
T |
|
| Q |
305 |
tatagaacac--cattaatacggccaaagaggagataattaaaagagttataaagccacaagaatcttatatccctttctctatcattgctaattcttct |
402 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2458 |
tagagaacacaccattaatacggccaaagaggagataattaaaagagttataaagccacaaatatctcctatccctttctctatcactgctaattcttct |
2359 |
T |
|
| Q |
403 |
actagagaagaaggaacaagtggaacacgaggctgcaatgtgtatgcatgcaaaacatgcaacaaaactttcacttcat |
481 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
2358 |
actagagaggaaggaacaagtggaacaccaggttgcaatgtgtatgcatgcaaaacatgtaaaaaaacttttacttcat |
2280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 199 - 487
Target Start/End: Original strand, 1693 - 1977
Alignment:
| Q |
199 |
aaaagattcataagacatttaatttgagttttctcacttatatgttgttcaacttcaacatttcatttatttcgaaaattttgacactataaagttttat |
298 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| |||| | || |||||| | |||||| |||||| |
|
|
| T |
1693 |
aaaagatccttaagacatttaatttgagtcatctcacttatatgttattcaacttaaacttttcattcattttggaacttttgagattataaaattttat |
1792 |
T |
|
| Q |
299 |
gggctctatagaaca--ccattaatacggccaaagaggagataattaaaagagttataaagccacaagaatcttatatccctttctctatcattgctaat |
396 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||| |||| |||||||||||| ||| ||| |
|
|
| T |
1793 |
gggctctagagaacacgccattaatatggccaaggaggagataattaaaagagttataaaatcaccacaatcttctatctctttctctatcactgccaat |
1892 |
T |
|
| Q |
397 |
tcttctactagagaagaaggaacaagtggaacacgaggctgcaatgtgtatgcatgcaaaacatgcaacaaaactttcacttcatctcact |
487 |
Q |
| |
|
|||| |||||| || |||||||| || | |||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
1893 |
tctt------gagaaggagaaacaagtgaaagagcaggctgcaatgtgtatgcatccaaaacatgtaacaaaactttcatttcatttcact |
1977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 34710333 - 34710380
Alignment:
| Q |
438 |
caatgtgtatgcatgcaaaacatgcaacaaaactttcacttcatctca |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34710333 |
caatgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctca |
34710380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 481
Target Start/End: Original strand, 34713957 - 34714000
Alignment:
| Q |
438 |
caatgtgtatgcatgcaaaacatgcaacaaaactttcacttcat |
481 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34713957 |
caatgtgtatgcatgcaaaacatgcaaaaaaactttcacttcat |
34714000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 481
Target Start/End: Complemental strand, 34406745 - 34406599
Alignment:
| Q |
336 |
gataattaaaagagttataaagccacaagaatcttatatccctttctctatcattgctaattcttctactagagaagaaggaacaagtggaacacg-agg |
434 |
Q |
| |
|
||||||| |||| ||||||||||||| | || || || |||||||| |||| | || |||| |||||| |||||| ||||||||| ||| | ||| |
|
|
| T |
34406745 |
gataattgaaagggttataaagccaccacaaactcctactcctttctccatcactacttattcatctactggagaaggaggaacaaggagaaagtgtagg |
34406646 |
T |
|
| Q |
435 |
ctgcaatgtgtatgcatgcaaaacatgcaacaaaactttcacttcat |
481 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
34406645 |
ttacaatgtgtatgcatgcaaaacatgtaacaaatctttcacttcat |
34406599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 12454036 - 12454008
Alignment:
| Q |
230 |
tctcacttatatgttgttcaacttcaaca |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12454036 |
tctcacttatatgttgttcaacttcaaca |
12454008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University