View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_28 (Length: 471)
Name: NF1532_low_28
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 46935504 - 46935957
Alignment:
| Q |
11 |
agaatatcaaatcactatttagtcttttatcatttgagttgtacttacaggacaataggatgatacttc-----------atgaaagtccaactctcact |
99 |
Q |
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| T |
46935504 |
agaatatcaaatcactatgtagtcttttatcatttgagttgtaattacaggacaataggatgatacttctatgacatataatgaaagtccaactctcact |
46935603 |
T |
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| Q |
100 |
ttacagataaatttgtgctatgtaaatgacgatgaaaataaaataaaatttagttttatagaaaaggcttctcagtcaacgaaattatttttatcagtac |
199 |
Q |
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| T |
46935604 |
ttacagataaatttgagctatgtaaatgacgatgaaaataaaataaaatttagttttatagaaaaggcttctcagtcaacgaaattattcttatcagtac |
46935703 |
T |
|
| Q |
200 |
tcttctaaatgttgaatacagaatggattcaggagtcttctgcaaaagtaacagnnnnnnnnnnnnnctttt----------gaagtaatttgtaattca |
289 |
Q |
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| T |
46935704 |
tcttctaaatgttgaatacagaataggttcaggagtcttctgcaaaagtaacagtttttttttttttttttttttttcttttgaagtaatttgtaattca |
46935803 |
T |
|
| Q |
290 |
gaaacgcaacctggctttgccagtgaaaatccatctatcaataccgatttagatttcggccttcaaccggaattcatggttcaaaagtcaggctttcagc |
389 |
Q |
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| T |
46935804 |
gaaacgcaacctggctttgccagtgaaaatccatctatcaataccgatgtagatttcggccttcaaccggaattcatggttcaaaagtcaggctttcagc |
46935903 |
T |
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| Q |
390 |
ctcccgtctcaccgattcaaacagcacagaggataggtacctctcaccaaagct |
443 |
Q |
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| T |
46935904 |
ctcccgtctcaccgattcaaacagcacagaggataggtacctctcaccaaagct |
46935957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 865263 - 865193
Alignment:
| Q |
373 |
aaagtcaggctttcagcctcccgtctcaccgattcaaacagcacagaggataggtacctctcaccaaagct |
443 |
Q |
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||||||| | ||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| |
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| T |
865263 |
aaagtcatggtttcagcttcccgtctcactgactcaaatagcacagaggacaggtacctctcgccaaagct |
865193 |
T |
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