View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_3 (Length: 253)
Name: NF1532_low_3
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1884087 - 1883864
Alignment:
| Q |
1 |
cattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaa |
100 |
Q |
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| T |
1884087 |
cattcattgcctataatcacaacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaa |
1883988 |
T |
|
| Q |
101 |
caatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgatgttctgagttggacaattgtttaatcaaaaaccaaaataaaagttaaag |
200 |
Q |
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| T |
1883987 |
caatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgaggttttgagttggaccat--tataatc-aaaaccaaaataaaagttaaag |
1883891 |
T |
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| Q |
201 |
ctgattgtcttaaattaatatatatca |
227 |
Q |
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| T |
1883890 |
ctcattgtcttaaattaatatatatca |
1883864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 1878074 - 1877947
Alignment:
| Q |
2 |
attcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaac |
101 |
Q |
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| T |
1878074 |
attcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaac |
1877975 |
T |
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| Q |
102 |
aatcacaaaccttgttgaagttcagaat |
129 |
Q |
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| T |
1877974 |
aatggcaaaccttgttgaaattcagaat |
1877947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 1877892 - 1877844
Alignment:
| Q |
171 |
tttaatcaaaaaccaaaataaaagtt-aaagctgattgtcttaaattaa |
218 |
Q |
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| T |
1877892 |
tttaatcaaaaaccaaaatgaaagttaaaagctggttgtcttaaattaa |
1877844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 1890696 - 1890602
Alignment:
| Q |
36 |
atccatgtaaaaggaccattttcttgtcat-ttttctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaat |
129 |
Q |
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|||| |||||||||||||| ||||| |||| |||||| || ||||||||| |||| ||||||||||||||||| || ||||||||||||| |
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| T |
1890696 |
atccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
1890602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1901992 - 1901922
Alignment:
| Q |
1 |
cattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttct |
71 |
Q |
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| T |
1901992 |
cattcattgcctataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 1895546 - 1895509
Alignment:
| Q |
36 |
atccatgtaaaaggaccattttcttgtcatttttctat |
73 |
Q |
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| T |
1895546 |
atccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 11549184 - 11549123
Alignment:
| Q |
10 |
cctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttct |
71 |
Q |
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||||||||||| |||| |||||| ||||||||||||| |||||| ||||| |||| ||||| |
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| T |
11549184 |
cctataatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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