View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_30 (Length: 456)

Name: NF1532_low_30
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_30
NF1532_low_30
[»] chr8 (3 HSPs)
chr8 (30-345)||(33588050-33588374)
chr8 (387-450)||(33587985-33588048)
chr8 (137-230)||(27075224-27075317)
[»] chr3 (3 HSPs)
chr3 (113-230)||(43089556-43089673)
chr3 (120-204)||(32932684-32932768)
chr3 (122-199)||(52932388-52932465)
[»] chr1 (3 HSPs)
chr1 (91-230)||(48247180-48247319)
chr1 (117-230)||(40351710-40351823)
chr1 (142-183)||(46581764-46581805)
[»] chr5 (1 HSPs)
chr5 (123-230)||(43045741-43045848)
[»] scaffold0184 (1 HSPs)
scaffold0184 (122-199)||(6402-6479)
[»] chr4 (1 HSPs)
chr4 (125-186)||(40335405-40335466)
[»] chr7 (1 HSPs)
chr7 (127-163)||(16066404-16066440)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 33588374 - 33588050
Alignment:
Q  30 taaggaacgacagatttttgaaagccctatatcaaaccatttcagtcgtacacaaaagggtaaaaaggagaaattgatcaactcatatgtgaggttgaga 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33588374 taaggaacgacagatttttgaaagccctgtatcaaaccatttcaatcgtacacaaaagggtaaaaaggagaaattgatcaactcatatgtgaggttgaga 33588275  T
Q  130 gaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggtggacgggtagaggagaaccaaaca- 228  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  33588274 gaatcaatttcaagaagctaggaattggagcttcacctaaaattaattttgaaaagctaaacttacgatggcggtggacgggtagaggagaaccaaacac 33588175  T
Q  229 --------cacttttgaaggtatggacgcacgtttttggctttttgaccgggttaccaaacacagactaagacattgaaggtaaaagcgcgtcctaaatt 320  Q
            |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  33588174 tgtaaaatcacttttgaaggcatggacgcgtgtttttggctttttgaccgggttaccaaacacaaactaagacattgaaggcaaaagggcgtcctaaatt 33588075  T
Q  321 gttgcatgttgctggataacattgt 345  Q
    |||||||||||||||||||||||||    
T  33588074 gttgcatgttgctggataacattgt 33588050  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 33588048 - 33587985
Alignment:
Q  387 tattttgatgattgctatcccacgcatgtagattcaacctttggttttaaatgatattattcga 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33588048 tattttgatgattgctatcccacgcatgtagattcaacctttggttttaaatgatattgttcga 33587985  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 27075224 - 27075317
Alignment:
Q  137 tttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggtggacgggtagaggagaaccaaacaca 230  Q
    |||||| |||||| ||||||||||||  || || ||||||| |||||||| |||| | ||||| || | || |||| |||||||||||||||||    
T  27075224 tttcaaaaagctaagaattggagctttgcccaacattgattctgaaaagcaaaacgtgcgatgatgattgaggggtggaggagaaccaaacaca 27075317  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 43089556 - 43089673
Alignment:
Q  113 catatgtgaggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggtggacgggt 212  Q
    ||||||| ||||||| |||||| |||||||||||||||  |||| |||||||||||||||||||| |||||||  |||| | || || |||| ||  |||    
T  43089556 catatgtcaggttgaaagaatcgatttcaagaagctagagattgtagcttcacctaaaattgattatgaaaaggaaaacgtgcggtgatggtagagaggt 43089655  T
Q  213 agaggagaaccaaacaca 230  Q
     |||||||||||||||||    
T  43089656 tgaggagaaccaaacaca 43089673  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 32932684 - 32932768
Alignment:
Q  120 gaggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggt 204  Q
    ||||||||||||||| ||||||||||| |||  ||||||||||| ||||||||||||| |||||||| |||| | ||||| ||||    
T  32932684 gaggttgagagaatcgatttcaagaagttagagattggagcttctcctaaaattgattatgaaaagcaaaacgtgcgatgatggt 32932768  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 52932388 - 52932465
Alignment:
Q  122 ggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatg 199  Q
    |||| ||| |||| ||||| ||||||||||| |  |||||||||| ||||||||||||| ||||| |||| |||||||    
T  52932388 ggtttagaaaatcgatttccagaagctaggagtcagagcttcacccaaaattgattttggaaagcaaaacgtacgatg 52932465  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 48247180 - 48247319
Alignment:
Q  91 aaaaaggagaaattgatcaactcat-atgtgaggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaa 189  Q
    ||||||| |||||||||  |||| | |||| |||||||||||||| ||||||||||| |||  ||||||||||| ||||||||| |||| ||||||| ||    
T  48247180 aaaaaggggaaattgattgactccttatgtcaggttgagagaatcgatttcaagaagttagagattggagcttctcctaaaattaatttcgaaaagcaaa 48247279  T
Q  190 acttacgatggtggtggacgggtagaggagaaccaaacaca 230  Q
    || ||| ||| || ||||  ||| ||||| |||||||||||    
T  48247280 ac-tacaatgttgttggagaggttgaggataaccaaacaca 48247319  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 40351823 - 40351710
Alignment:
Q  117 tgtgaggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggtggacgggtagag 216  Q
    |||| |||||||||||||  |||||| |||||| || | |||||||| || |||||||||| | |||||| |||| | ||||  | || ||  ||| |||    
T  40351823 tgtgtggttgagagaatcgctttcaaaaagctaagattcggagcttctcccaaaattgattatcaaaagcaaaacgtgcgataatagtagagaggtggag 40351724  T
Q  217 gagaaccaaacaca 230  Q
    ||||||||||||||    
T  40351723 gagaaccaaacaca 40351710  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 46581764 - 46581805
Alignment:
Q  142 agaagctaggaattggagcttcacctaaaattgattttgaaa 183  Q
    ||||||||||| |||||||||| |||||||||| ||||||||    
T  46581764 agaagctaggatttggagcttctcctaaaattgcttttgaaa 46581805  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 43045741 - 43045848
Alignment:
Q  123 gttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatggtggtggacgggtagaggagaac 222  Q
    ||||| |||||| ||||||||||||||   |||| |||||||||||||||||||| |||||||  |||| |  | || |||| ||  ||| |||||||||    
T  43045741 gttgaaagaatcgatttcaagaagctatagattgtagcttcacctaaaattgattctgaaaaggaaaacgtggggtgatggtagataggttgaggagaac 43045840  T
Q  223 caaacaca 230  Q
    ||||||||    
T  43045841 caaacaca 43045848  T

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Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 6479 - 6402
Alignment:
Q  122 ggttgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagctaaacttacgatg 199  Q
    |||| ||| |||| ||||| ||||||||| || | |||||||||| ||||||||||||| | ||| |||| |||||||    
T  6479 ggtttagaaaatcgatttccagaagctagtaagtagagcttcacccaaaattgattttggagagcaaaacgtacgatg 6402  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 40335466 - 40335405
Alignment:
Q  125 tgagagaatcaatttcaagaagctaggaattggagcttcacctaaaattgattttgaaaagc 186  Q
    |||||||||  |||||||||||||| ||| |||||||||| | |||||||||| | ||||||    
T  40335466 tgagagaattgatttcaagaagctatgaaatggagcttcatccaaaattgattctcaaaagc 40335405  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 16066440 - 16066404
Alignment:
Q  127 agagaatcaatttcaagaagctaggaattggagcttc 163  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  16066440 agagactcaatttcaagaagctaggaattgcagcttc 16066404  T

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