View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_31 (Length: 453)
Name: NF1532_low_31
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 28 - 440
Target Start/End: Original strand, 41942290 - 41942721
Alignment:
| Q |
28 |
catgaacttcatttccttttggtttgggccacttttgctaaagttataagttgaatatttcaatgtctttcccatcaacaatctaattttaaccatccat |
127 |
Q |
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| T |
41942290 |
catgaacttcatttccttttggtttgggccacttttgctaaagttataagttgaatatttcaatgtctttcccatcaacaatctaattttaaccatccat |
41942389 |
T |
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| Q |
128 |
gaaagcaatatgtgtttttcaactcacttgagtcggtttgatgatgttgacttgagacattcgag----------------gtctcaaattcgattctct |
211 |
Q |
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| T |
41942390 |
ggaagcaatatgtgtttttcaacccacttgagtcggtttgatgatgttgacttgagacattcgaatgtactcctccttaaagtctcaaatttgattctct |
41942489 |
T |
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| Q |
212 |
ttaatgctaatttagatggac--tggtttaacttattcnnnnnnntacgagttgtgaaaatagttttagaaatgcacg-tttgagaaaaatgttgaagca |
308 |
Q |
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| T |
41942490 |
ttaatgctaatttagatggacactggtttagcttattcaaaaaaatacgagttgtgaaaatatttttagaaatgcacgctttgagaaaaatgttgaagca |
41942589 |
T |
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| Q |
309 |
cacatattggagccctataaacaaaaattaaagggtgcaaaaagcaaccctgacagatgatgagagtttgacttagtaagaccaatcattcttaaaaaga |
408 |
Q |
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| T |
41942590 |
cacatattggagccctataaacaaaacttagagggtgcaaaaagcaaccctgacagatgatgagagtttgacttagtaagaccaatcattcttaaaaaga |
41942689 |
T |
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| Q |
409 |
aaatttgggcactgaacccaaagaatgaagta |
440 |
Q |
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| T |
41942690 |
aaatttgggcactgaacccaaagaatgaagta |
41942721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 16951434 - 16951489
Alignment:
| Q |
188 |
tcgaggtctcaaattcgattctctttaatgctaatttagatggactggtttaactt |
243 |
Q |
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| T |
16951434 |
tcgaggtctcaggttcgattctcttcaatgctaatttagatgggctaatttaactt |
16951489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 17022099 - 17022154
Alignment:
| Q |
188 |
tcgaggtctcaaattcgattctctttaatgctaatttagatggactggtttaactt |
243 |
Q |
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| T |
17022099 |
tcgaggtctcaggttcgattctcttcaatgctaatttagatgggctaatttaactt |
17022154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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