View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_36 (Length: 437)
Name: NF1532_low_36
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 34437498 - 34437110
Alignment:
| Q |
20 |
atttttgaagaagtgtttatagatttccatgaagaggaattaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatg |
119 |
Q |
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| T |
34437498 |
atttttgaagaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatg |
34437399 |
T |
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| Q |
120 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagat |
219 |
Q |
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| T |
34437398 |
aaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagat |
34437299 |
T |
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| Q |
220 |
aaaaggaattccttttcctttattcacaaggcacacatttgtttcttctgatgttgccatgctgattatttccaatgcaacttgttctgaagcattctta |
319 |
Q |
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| T |
34437298 |
aaaaggaattccttttcctttattcacaaggcacacatttgtttcttctgatgttgccatgctgattgtttccaatgcaacttgttctgaagcattctta |
34437199 |
T |
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| Q |
320 |
aatttcactgatgaccagaaatttacaccaacatagagatcaaattcaggcagtttgttttcgccgtcatagtttccatacaagaaaga |
408 |
Q |
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| T |
34437198 |
aatttcactgatgaccagaaatttacaccaacatagagatcaaattcaggcagtttgttttcgccgtcatagtttccatacaagaaaga |
34437110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 34444249 - 34443857
Alignment:
| Q |
16 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccatta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
34444249 |
atcaatttttgaagaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccatta |
34444150 |
T |
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| Q |
116 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || | |
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| T |
34444149 |
aatgaaccaatgtcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcgg |
34444050 |
T |
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| Q |
216 |
agataaaaggaattccttttcctttattcacaaggcacacatttgtttcttctgatgttgccatgctgattatttccaatgcaacttgttctgaagcatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
34444049 |
agataaaaggaattccttttcctttattcacaaggcaaacatttgtttcttctgatgttgccatgctgattatttccaatgtaactccttctgaagcatt |
34443950 |
T |
|
| Q |
316 |
cttaaatttcactgatgaccagaaatttacaccaacatagagatcaaattcaggcagtttgttttcgccgtcatagtttccatacaagaaaga |
408 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34443949 |
cttaaatttaactgttgaccataaatttacaccaacatagagatcaaattcaggcagtttgttttcgccgtcatagtttccatacaagaaaga |
34443857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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