View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_37 (Length: 435)
Name: NF1532_low_37
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 50393952 - 50393616
Alignment:
| Q |
1 |
tccattcaaacatcaatataataaatttatgctctcccaaatcccaaagaaaatcattttcgttaaaagtgataaatatttgctgtacttgccattgatt |
100 |
Q |
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| T |
50393952 |
tccattcaaacatcaatataataaatttatgcactcccaaatcccaaagaaaatcattttcgttaaaagtgataaatatttgctgtacttgccattgatt |
50393853 |
T |
|
| Q |
101 |
ttggtcttgtctatgtgccatttgtattataattatctccggtgaatgattccatgcatgataactgtacggcttgatacagggtgtagaaggccactag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
50393852 |
ttggtcttgtctatgtgccatttgtattataattatctccggtgaatgattccatgcatgataactgtacggcttgatacggggtgtagcaggccactag |
50393753 |
T |
|
| Q |
201 |
cagcagcaaacatcatcccataacatatttaaactaaatatagaaatgatatcagttaactagctagtaaagagaaatcaaaatacgatgagttgaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50393752 |
cagcagcaaacatcatcccataacatatttaaactaaatatagaaatgatatcagttaactagctagtaaagagaaatcaaaatacgatgagttgaaact |
50393653 |
T |
|
| Q |
301 |
gatacttatatgttctaaacaaactaaccgaaccaac |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50393652 |
gatacttatatgttctaaacaaactaaccgaaccaac |
50393616 |
T |
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