View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_39 (Length: 433)
Name: NF1532_low_39
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 42759792 - 42759628
Alignment:
| Q |
48 |
ctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttc |
147 |
Q |
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| T |
42759792 |
ctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttc |
42759693 |
T |
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| Q |
148 |
ttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtc |
212 |
Q |
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| T |
42759692 |
ttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtc |
42759628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 42759531 - 42759436
Alignment:
| Q |
313 |
aagtttgccaaatctattttgttccagactatttctgtttaatataagtatccaatttcatttcaattccatttatatttttccctaagtaattct |
408 |
Q |
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| T |
42759531 |
aagtttgccaaatctattttgttcaagactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttccctaagtaattct |
42759436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 1402056 - 1402208
Alignment:
| Q |
48 |
ctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttc |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1402056 |
ctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttttactcatctgtttctaaactttc |
1402155 |
T |
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| Q |
148 |
ttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
200 |
Q |
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| T |
1402156 |
ttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 316 - 408
Target Start/End: Original strand, 1402306 - 1402397
Alignment:
| Q |
316 |
tttgccaaatctattttgttccagactatttctgtttaatataagtatccaatttcatttcaattccatttatatttttccctaagtaattct |
408 |
Q |
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| T |
1402306 |
tttgccaaatctattttgttcaagactatatctgtttaat-taagtatccagtttcatttcaattccatttatattttgccctaagtaattct |
1402397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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