View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_3_N (Length: 810)
Name: NF1532_low_3_N
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_3_N |
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Alignment Details
Target: chr7 (Bit Score: 689; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 30 - 799
Target Start/End: Original strand, 37416873 - 37417633
Alignment:
| Q |
30 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416873 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
37416972 |
T |
|
| Q |
130 |
cacaatccagaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaa |
229 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37416973 |
cacaatccacaagtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatataagaaaa |
37417072 |
T |
|
| Q |
230 |
aactaagttgccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagatttttcactcatatttcaaagtacaacaccctgatcaaat |
329 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37417073 |
aactaagttgccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagattttccactcatatttcaaagtacaacaccctgatcaaat |
37417172 |
T |
|
| Q |
330 |
tgtagaactcaaagcgattaaaagtacaatagccttcaaattgtagaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttcata |
429 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37417173 |
tgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttcata |
37417272 |
T |
|
| Q |
430 |
ggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatgagg |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
37417273 |
ggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtat-----ccgatgaaatttgcacgatcttgtaacatgagg |
37417367 |
T |
|
| Q |
530 |
aacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaaccctta |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417368 |
aacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttt |
37417467 |
T |
|
| Q |
630 |
attagatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaag |
729 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417468 |
----gatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaag |
37417563 |
T |
|
| Q |
730 |
actaatctgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
799 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37417564 |
actaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37417633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 30 - 799
Target Start/End: Original strand, 37424405 - 37425165
Alignment:
| Q |
30 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37424405 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggacttacataatgctaatga |
37424504 |
T |
|
| Q |
130 |
cacaatccagaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaa |
229 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
37424505 |
cacaatccacaagtgttccaaacacctcaaatgacttgacagcattatttccaacagaatttgtcatcacagtttttccaatagtaaaaatatatgaaaa |
37424604 |
T |
|
| Q |
230 |
aactaagttgccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagatttttcactcatatttcaaagtacaacaccctgatcaaat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424605 |
aactaagttgccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagatttttcactcatatttcaaagtacaacaccctgatcaaat |
37424704 |
T |
|
| Q |
330 |
tgtagaactcaaagcgattaaaagtacaatagccttcaaattgtagaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttcata |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37424705 |
tgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttcata |
37424804 |
T |
|
| Q |
430 |
ggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatgagg |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
37424805 |
ggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtat-----cctatgaaatttgcacgatcttgtaacatgagg |
37424899 |
T |
|
| Q |
530 |
aacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaaccctta |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37424900 |
aacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgactgggtggagtttgagaaaacattctaaaactgtgaagaggaaacccttt |
37424999 |
T |
|
| Q |
630 |
attagatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaag |
729 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37425000 |
----gatttctctcctattctcttttgtccgttctcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaag |
37425095 |
T |
|
| Q |
730 |
actaatctgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37425096 |
actaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37425165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 633 - 720
Target Start/End: Original strand, 34317819 - 34317906
Alignment:
| Q |
633 |
agatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
720 |
Q |
| |
|
||||||||||||||||||| ||| || ||| ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| |
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|
| T |
34317819 |
agatttctctcctattctcctttatcctttctcaatctttcaataaaatagttcattattttcaattcaattcttaggttcctaacaa |
34317906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 668 - 719
Target Start/End: Original strand, 43672413 - 43672464
Alignment:
| Q |
668 |
tctttcaataaaattgtttattcttttccattcaattctttggttcctaaca |
719 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
43672413 |
tctttcaataaaattgtccattcttttccattcaattcttgggttcctaaca |
43672464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 8573759 - 8573811
Alignment:
| Q |
78 |
tattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgac |
130 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
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|
| T |
8573759 |
tattagagaatgcaattttgttggtcaacaagggctcatgtaatgctaatgac |
8573811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 638 - 720
Target Start/End: Original strand, 10057358 - 10057440
Alignment:
| Q |
638 |
tctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
720 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| |
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|
| T |
10057358 |
tctctcctattctcgtttgtcctttctcaatctttcaataaaattgttcgttcctttcatatcaattttttggttcctaacaa |
10057440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 717
Target Start/End: Original strand, 7872062 - 7872146
Alignment:
| Q |
633 |
agatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaa |
717 |
Q |
| |
|
||||||||||| ||||||| ||| || || |||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
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| T |
7872062 |
agatttctctcatattctcatttatcctttatcaatatttcaataaaattgttcattcttttcaattcaatacttgggttcctaa |
7872146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 717
Target Start/End: Complemental strand, 52127714 - 52127667
Alignment:
| Q |
670 |
tttcaataaaattgtttattcttttccattcaattctttggttcctaa |
717 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||| || ||||||||| |
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| T |
52127714 |
tttcaataaaattgttgattcttttcaattcaattattgggttcctaa |
52127667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 721
Target Start/End: Original strand, 50891041 - 50891122
Alignment:
| Q |
640 |
tctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaa |
721 |
Q |
| |
|
||||| |||||| ||| || ||| ||||||||||||||||||| | ||| ||||| ||| || |||| ||||||||||||| |
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| T |
50891041 |
tctcccattctcctttatcctttctcaatctttcaataaaattgctcatttttttcaatttaactcttgggttcctaacaaa |
50891122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 727
Target Start/End: Original strand, 53504744 - 53504789
Alignment:
| Q |
682 |
tgtttattcttttccattcaattctttggttcctaacaaacactta |
727 |
Q |
| |
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||||| |||| |||||||||||| ||||||||||||||||| |||| |
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| T |
53504744 |
tgttttttctattccattcaattatttggttcctaacaaacgctta |
53504789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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