View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_4 (Length: 775)

Name: NF1532_low_4
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_4
NF1532_low_4
[»] chr7 (4 HSPs)
chr7 (30-770)||(23118004-23118744)
chr7 (333-431)||(15742094-15742192)
chr7 (335-398)||(15743307-15743370)
chr7 (376-431)||(29418489-29418544)
[»] chr1 (9 HSPs)
chr1 (334-431)||(37810816-37810913)
chr1 (335-398)||(28875335-28875398)
chr1 (376-431)||(28875396-28875451)
chr1 (335-398)||(28876566-28876629)
chr1 (335-398)||(44031798-44031861)
chr1 (376-431)||(51836369-51836424)
chr1 (380-431)||(44031725-44031776)
chr1 (334-408)||(19620693-19620767)
chr1 (335-396)||(51837570-51837631)
[»] chr6 (4 HSPs)
chr6 (335-431)||(29657203-29657299)
chr6 (333-431)||(1574184-1574282)
chr6 (335-431)||(1572973-1573069)
chr6 (335-396)||(11381399-11381460)
[»] chr5 (6 HSPs)
chr5 (335-431)||(41423349-41423445)
chr5 (335-410)||(17900158-17900232)
chr5 (335-431)||(20013857-20013953)
chr5 (335-398)||(14672316-14672379)
chr5 (335-398)||(41422225-41422288)
chr5 (376-431)||(41422286-41422341)
[»] chr2 (5 HSPs)
chr2 (335-431)||(4518762-4518858)
chr2 (335-431)||(44112623-44112719)
chr2 (376-431)||(44113115-44113170)
chr2 (335-398)||(44113168-44113234)
chr2 (357-410)||(8489193-8489246)
[»] chr3 (8 HSPs)
chr3 (335-431)||(30574801-30574897)
chr3 (376-431)||(30575963-30576018)
chr3 (380-431)||(6529204-6529255)
chr3 (380-431)||(6530292-6530343)
chr3 (335-398)||(30576016-30576079)
chr3 (335-398)||(6529256-6529320)
chr3 (335-398)||(6530344-6530408)
chr3 (343-404)||(14414622-14414683)
[»] chr8 (2 HSPs)
chr8 (335-431)||(32688694-32688790)
chr8 (335-415)||(13047566-13047646)
[»] chr4 (8 HSPs)
chr4 (335-428)||(13417600-13417693)
chr4 (335-398)||(30101378-30101441)
chr4 (335-398)||(48367387-48367450)
chr4 (376-431)||(48367448-48367503)
chr4 (335-398)||(52038909-52038972)
chr4 (335-398)||(56331690-56331753)
chr4 (380-431)||(56331775-56331826)
chr4 (376-431)||(52038856-52038911)


Alignment Details
Target: chr7 (Bit Score: 713; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 30 - 770
Target Start/End: Original strand, 23118004 - 23118744
Alignment:
Q  30 tgtatatcagttactaaatgtctattctcaatgttgttcaaagatatccaagttcaattaagcactcaatagatatgcaagttcaattaagcactcgata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118004 tgtatatcagttactaaatgtctattctcaatgttgttcaaagatatccaagttcaattaagcactcaatagatatgcaagttcaattaagcactcgata 23118103  T
Q  130 aaagaaattctaacattgtttataaattgcttttgtagatactggggctcttcttacttttggctggggtctgcatggacaggtaagtccgctgcttttc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118104 aaagaaattctaacattgtttataaattgcttttgtagatactggggctcttcttacttttggctggggtctgcatggacaggtaagtccgctgcttttc 23118203  T
Q  230 ggatattttagtatattcctatagttttctgcttagataaataaacattagttttcaatgcaaaagatctgatggaacttgaacatgctgaaaactctga 329  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118204 ggatattttagtatattcctctagttttctgcttagataaataaacattagttttcaatgcaaaagatctgatggaacttgaacatgctgaaaactctga 23118303  T
Q  330 cattgtgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataata 429  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118304 cattgtgttaggtatcgggtggtattcatagggtaactgctgatccagttagttattttaatatatagttatttaggagcaattagcattttgtataata 23118403  T
Q  430 tgggcaacaaaaggctaaacaacagactcatgcttaaactataaactggacagaagtggactgtgatcccagattaggtgttgaaatatttgaatcctac 529  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  23118404 tgggaaacaaaaggctaaacaacagactcatgcttaaactataaactggacagaagtggactgtgatcccagattaggcattgaaatatttgaatcctac 23118503  T
Q  530 ttgggaaatgactttacctattcatgacctgagtcctcagggtagggatgtcgacagggtgaaggtgggggactggggagtactctcctgctctttgtcc 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118504 ttgggaaatgactttacctattcatgacctgagtcctcagggtagggatgtcgacagggtgaaggtgggggactggggagtactctcctgctctttgtcc 23118603  T
Q  630 cctatctgtcatattacccaagttcatgtctcttctactcctgtggagccccaaatatgacagaccctgcaagaatctccatgtagcagtaataattgac 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23118604 cctatctgtcatattacccaagttcatgtctcttctactcctgtggagccccaaatatgacagaccctgcaagaatctccatgtagcagtaataattgac 23118703  T
Q  730 gtctctacctaaagattagtttccagctattctgtggtgct 770  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23118704 gtctctacctaaagattagtttccagctattttgtggtgct 23118744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 15742094 - 15742192
Alignment:
Q  333 tgtgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  15742094 tgtgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 15742192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 15743307 - 15743370
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  15743307 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 15743370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 29418544 - 29418489
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  29418544 agtcagttattttaatatatagttatttaggagcagttagcattttatataatatg 29418489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 37810816 - 37810913
Alignment:
Q  334 gtgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37810816 gtgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 37810913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 28875335 - 28875398
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  28875335 tgttaggtatctggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 28875398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 28875396 - 28875451
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  28875396 agtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 28875451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 28876566 - 28876629
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  28876566 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 28876629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 44031861 - 44031798
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  44031861 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatatatagt 44031798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 51836369 - 51836424
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  51836369 agtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 51836424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 44031776 - 44031725
Alignment:
Q  380 agttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  44031776 agttattttaatatatagttatttaggaacagttagcattttgtataatatg 44031725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 19620767 - 19620693
Alignment:
Q  334 gtgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggag 408  Q
    |||||||||||||| ||||||| ||||||||| || |||| ||||| |||||||||||||| | |||||||||||    
T  19620767 gtgttaggtatcggatggtattgatagggtaaatgttgatgcagtcggttattttaatatacaattatttaggag 19620693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 51837570 - 51837631
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatata 396  Q
    ||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||||||||||||||    
T  51837570 tgttaggtatccggtggcattgatagggtgactgctgatgcagtcagttattttaatatata 51837631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 29657203 - 29657299
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29657203 tgttaggtatccggtggtattgatagggtaactgctaatgcagtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 29657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 1574282 - 1574184
Alignment:
Q  333 tgtgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  1574282 tgtgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 1574184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 1573069 - 1572973
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||| |||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  1573069 tgttaggtatccggtgatattgatagggtgactgctgatgcagtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 1572973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 11381399 - 11381460
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatata 396  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  11381399 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatatata 11381460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 41423445 - 41423349
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41423445 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 41423349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 17900232 - 17900158
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagca 410  Q
    ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  17900232 tgttaggtatcgggtggtattga-agggtaactgctgatgcagtcagttattttaatatatggttatttaggagca 17900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 20013953 - 20013857
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||| |||  | ||||||| |||||    
T  20013953 tgttaggtatcgggtggtattgatagggtaattgctgatgcaatcagttattttaatatacagttatttaggggcagttaatagtttgtatcatatg 20013857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 14672316 - 14672379
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  14672316 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 14672379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 41422225 - 41422288
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  41422225 tgttaggtatctggtggtattgatagggtaactgctgatgcagtaagttattttaatatatagt 41422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 41422286 - 41422341
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||    
T  41422286 agtcagttattttaatatatagttatttaggaacagttagcattttgtatagtatg 41422341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 4518762 - 4518858
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4518762 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 4518858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 44112623 - 44112719
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  44112623 tgttaggtatccggtgggattgatagggtaactgctgatgcagtcagttattttaatatattgttatttaggagcagttagcattttgtataatatg 44112719  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 44113170 - 44113115
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  44113170 agtcagttattttattatatagttatttaggagcagctagcattttgtataatatg 44113115  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 44113234 - 44113168
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagt---tattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||   ||||||||||||||||    
T  44113234 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattattttaatatatagt 44113168  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 8489246 - 8489193
Alignment:
Q  357 atagggtaactgctgatccagtcagttattttaatatatagttatttaggagca 410  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||||||||||    
T  8489246 atagggtaactgctgatgcaatcagttgttttaatatacagttatttaggagca 8489193  T

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Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 30574897 - 30574801
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||| |||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30574897 tgtttggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 30574801  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 30576018 - 30575963
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30576018 agtcagttattttaatatatagttatttaggagcagttagcattttgtataatatg 30575963  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 6529255 - 6529204
Alignment:
Q  380 agttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6529255 agttattttaatatatagttatttaggagcagttagcattttgtataatatg 6529204  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 6530343 - 6530292
Alignment:
Q  380 agttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6530343 agttattttaatatatagttatttaggagcagttagcattttgtataatatg 6530292  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 30576079 - 30576016
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  30576079 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatatatagt 30576016  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 6529320 - 6529256
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgc-tgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||| |||| || |||||||||||||||||||||    
T  6529320 tgttaggtatccggtggtattgatagggtaactgcttgatgcaatcagttattttaatatatagt 6529256  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 6530408 - 6530344
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgc-tgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||| |||| || |||||||||||||||||||||    
T  6530408 tgttaggtatccggtggtattgatagggtaactgcttgatgcaatcagttattttaatatatagt 6530344  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 14414683 - 14414622
Alignment:
Q  343 atcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttattta 404  Q
    ||||||||||||  |||||| |||||||||| ||||  |||||||||||||| |||||||||    
T  14414683 atcgggtggtatagatagggaaactgctgatgcagttggttattttaatatacagttattta 14414622  T

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Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 32688790 - 32688694
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    |||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||    
T  32688790 tgttaggtattgggtagtattgatagggtaactgctgatgcagtcagttattttaatatacagttatttaggagcagttagtagtttgtataatatg 32688694  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 13047566 - 13047646
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattag 415  Q
    |||||||| |||||||||||| ||||||||| ||||||| |||| |||||||||| |||| ||||||||||||||| ||||    
T  13047566 tgttaggtgtcgggtggtattgatagggtaattgctgatgcagttagttattttagtatacagttatttaggagcagttag 13047646  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 13417600 - 13417693
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagttatttaggagcaattagcattttgtataat 428  Q
    ||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||| ||||||||| ||||| |||||| ||| ||||||    
T  13417600 tgttaggtatcgggtggtattgatagggtaactgctgatgtagtaagttattttaatatacagttatttaagagcagttagcagtttctataat 13417693  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 30101378 - 30101441
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  30101378 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 30101441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 48367387 - 48367450
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  48367387 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatatatagt 48367450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 48367448 - 48367503
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  48367448 agtcagttattttaatatatagttatttaggagcagttagcattttgtgtaatatg 48367503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 52038972 - 52038909
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  52038972 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatttaaatatatagt 52038909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 56331690 - 56331753
Alignment:
Q  335 tgttaggtatcgggtggtatttatagggtaactgctgatccagtcagttattttaatatatagt 398  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  56331690 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatatatagt 56331753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 56331775 - 56331826
Alignment:
Q  380 agttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  56331775 agttattttaatatatagttatttaggagcagttagcattttgtataatatg 56331826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 52038911 - 52038856
Alignment:
Q  376 agtcagttattttaatatatagttatttaggagcaattagcattttgtataatatg 431  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||    
T  52038911 agtcagttattttaatatatagttaattatgagcagttagcattttgtatattatg 52038856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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