View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_40 (Length: 430)
Name: NF1532_low_40
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 419
Target Start/End: Complemental strand, 8374092 - 8373695
Alignment:
| Q |
29 |
aaaaacgtcatgtgctttgttctttcatgcctcaatcgttgcatctacgtttcgatactttaacaaagttcattcgtcgtggcatccacaagtaaagcta |
128 |
Q |
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| T |
8374092 |
aaaaacgtcatgtgctttgttctttaatgcctcaatcgttgcatctacgtttcaatactttaacaaagttcattcgt---ggcatccacaattaaagcta |
8373996 |
T |
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| Q |
129 |
gctagattaattataatctcttgagccaaaa-cgaaatagcatacagttgtgcacgagcttatacataaa-----atgcaaacctcagagattaaaactt |
222 |
Q |
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| T |
8373995 |
gctagattaattataatctcttgagccaaaaacgaaatagcatacagttgtgcacgagcttatacataaatctctatgcaaacctcagagattaaaactt |
8373896 |
T |
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| Q |
223 |
tcacatttgtgacgtatgtaggtaaaaataattactttaacgagtaaaaaatctcaaaagtaggcatactattacccaaaggtaaatttttgtcacttct |
322 |
Q |
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| T |
8373895 |
ttacatttgtgacgtatgtaggtaaaaataattactttaacgagtaaaaaatctcaaaagtaggcatactattacccaagggtaaatttttgtcacttct |
8373796 |
T |
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| Q |
323 |
ccactaccatgacatgtagtgtaccttgaattataagtga------tatg---tattaagattaagatattgtgcttgaattatagaaatttatattccc |
413 |
Q |
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||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8373795 |
ccactaccatgacatgtag-----cttgaattataagtgataatagtatgtactattaagattaagatattgtgcttgaattatagaaatttatattccc |
8373701 |
T |
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