View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_42 (Length: 415)
Name: NF1532_low_42
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_42 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 94 - 415
Target Start/End: Complemental strand, 46770011 - 46769691
Alignment:
| Q |
94 |
aacgtggatctcatgcgcgcaactaattaaaccaatccatcgagttgggttgcactgcaatagacggaaaagttctctctnnnnnnntttaacgatctcc |
193 |
Q |
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| T |
46770011 |
aacgtgtatctcatgcgcgcaactatttagactaatccattgagttgggttgcactgcaaaaaacggaaaagttctctctaaaaaaatttaacgatctcc |
46769912 |
T |
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| Q |
194 |
agtttaattgattcgaacacatgttctccggcaaaacttgattcgaatttattgatctcgaatttaattgagagagatcctttagcatctcatctaaaag |
293 |
Q |
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| T |
46769911 |
agtttaattgattcgaactcatgttctccggcaaaacttgattcgaatttat-gatctcgagtttaattgagagagatcctttagcatctcatctaaaag |
46769813 |
T |
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| Q |
294 |
catattcaattacaagtttataaggaacacgaacttgattattttataatattaagtggcttccacaatgtcatatcacgcttatgcaactcaaacatat |
393 |
Q |
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| T |
46769812 |
catcttcaattacaagtttataaggaacacaaatttgattcttttataatattaagtggctcccacaatgtcatatcacacttatgcaactcaaacatat |
46769713 |
T |
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| Q |
394 |
tttactccaatgataataaatt |
415 |
Q |
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| T |
46769712 |
tttactccaatgataataaatt |
46769691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 46770066 - 46770028
Alignment:
| Q |
30 |
cccatgtcgttatgaaatgttgcttcttcaacaacatac |
68 |
Q |
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| T |
46770066 |
cccatgtcgttatgaaatgttgcttcttcaacaacatac |
46770028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 24579882 - 24579949
Alignment:
| Q |
341 |
aatattaagtggcttccacaatgtcatatcacgcttatgcaactcaaacatattttactccaatgata |
408 |
Q |
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| T |
24579882 |
aatattaagtgactcccacaatgtcacattacacttatgcaactcaaacattttttgctccaatgata |
24579949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 396
Target Start/End: Complemental strand, 35328547 - 35328492
Alignment:
| Q |
341 |
aatattaagtggcttccacaatgtcatatcacgcttatgcaactcaaacatatttt |
396 |
Q |
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| T |
35328547 |
aatattaaatggctctcacaatgtcatatcacacttatgcaactcaagcatatttt |
35328492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 2875194 - 2875262
Alignment:
| Q |
341 |
aatattaagtggcttccacaatgtcatatcacgcttatgcaactcaaacatattttactccaatgataa |
409 |
Q |
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| T |
2875194 |
aatattaaatggtttccacaatgtcatttcgcacttatgccactcaagcatatttttcttcaatgataa |
2875262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 40592326 - 40592369
Alignment:
| Q |
344 |
attaagtggcttccacaatgtcatatcacgcttatgcaactcaa |
387 |
Q |
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| T |
40592326 |
attaagtggcttccacaatgtcacatcatgtttatgcaactcaa |
40592369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 20834547 - 20834607
Alignment:
| Q |
344 |
attaagtggcttccacaatgtcatatcacgcttatgcaactcaaacatattttactccaat |
404 |
Q |
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| T |
20834547 |
attaaatggttttcacaatgtcacatcacactcatgtaactcaaacatattttattccaat |
20834607 |
T |
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