View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_43 (Length: 412)
Name: NF1532_low_43
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_43 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 33822885 - 33823148
Alignment:
| Q |
29 |
agcaataaaccatctttaagaagtaactttgatgacttttacaatctcctttgactcccaagttttagnnnnnnnnntaacctcattttgagctttccaa |
128 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||| | || |
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| T |
33822885 |
agcaataaaccatctttaagaggtaattttgatgacttttacaatctcttctgactcccaagttttagaagaaaaaataacctcatttcaagcttcctaa |
33822984 |
T |
|
| Q |
129 |
attttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
33822985 |
atttttcaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatgatgaaaaatatttaaggagtgaaacaatattac |
33823084 |
T |
|
| Q |
229 |
cgggtaaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaataaagta |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33823085 |
cgggtaaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaacaaagta |
33823148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 265
Target Start/End: Complemental strand, 24572469 - 24572341
Alignment:
| Q |
136 |
aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa |
235 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||| ||| |||||||| || ||||||||||| |||||| | | ||||||||||||||||||||| ||||| |
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|
| T |
24572469 |
aaattgttgcatgccaaatgagtgtaagcccctttcgatgttttttagccaaagaagatgatgaaaattgtg-aaggagtgaaacaatattaccaggtaa |
24572371 |
T |
|
| Q |
236 |
aatcaccctcgttctaatccatttaaaaat |
265 |
Q |
| |
|
|||||||| |||| ||| |||||||||| |
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|
| T |
24572370 |
aatcacccctgttccgatcaatttaaaaat |
24572341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 24577847 - 24577707
Alignment:
| Q |
124 |
tccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaat |
223 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||| ||||| ||| ||||||| || |||||| ||| |||| ||| || ||||||||||||| | |
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|
| T |
24577847 |
tccaaattttctaaattgttgcatgccaaatgagtgtaagcccctttcaatgttttttaacaaaagaatatgatgaataatgttgaaggagtgaaacagt |
24577748 |
T |
|
| Q |
224 |
attaccgggtaaaatcaccctcgttctaatccatttaaaaat |
265 |
Q |
| |
|
| || | |||||||||||||||||||| ||||||||||||| |
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|
| T |
24577747 |
a-tatccggtaaaatcaccctcgttcttttccatttaaaaat |
24577707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 31789699 - 31789785
Alignment:
| Q |
109 |
cctcattttgagctttccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatg |
195 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||| || ||||||||||| ||||| ||| ||| |||| || |||||| ||||| |
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|
| T |
31789699 |
cctcatttcgagctgtccaaattttccaaatccttgcataccaaatgagtgtaagcccctttcgatattttttagtcaaagcagatg |
31789785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 47946508 - 47946399
Alignment:
| Q |
292 |
ataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtgggtccaacagtagcaatgtttcacacatacattcaacctt |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47946508 |
ataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacctt |
47946409 |
T |
|
| Q |
392 |
cttcctgttc |
401 |
Q |
| |
|
|||||||||| |
|
|
| T |
47946408 |
cttcctgttc |
47946399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 47951938 - 47951829
Alignment:
| Q |
292 |
ataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtgggtccaacagtagcaatgtttcacacatacattcaacctt |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47951938 |
ataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaatgtttcacacatacattcaacctt |
47951839 |
T |
|
| Q |
392 |
cttcctgttc |
401 |
Q |
| |
|
|||||||||| |
|
|
| T |
47951838 |
cttcctgttc |
47951829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 33810868 - 33810990
Alignment:
| Q |
168 |
ttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccctcgttctaatccatttaaaaattg |
267 |
Q |
| |
|
|||||||||||| || ||||||||| | ||||||||| | |||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
33810868 |
ttttgatgttttttaaccaaagaagaggatgaaaaatagtcgcggagtgaaacaatattacttggtaaaatcacactcgttccaatccatttttaaattc |
33810967 |
T |
|
| Q |
268 |
cataacaaatccttccaataaag |
290 |
Q |
| |
|
|||| ||||||||| |||||||| |
|
|
| T |
33810968 |
catatcaaatccttgcaataaag |
33810990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 7041972 - 7041920
Alignment:
| Q |
190 |
aagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcacc |
242 |
Q |
| |
|
|||||| || |||||| | ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
7041972 |
aagatgatggaaaatagtcaaggagtgaaaaaatattgccgggtaaaatcacc |
7041920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 285
Target Start/End: Complemental strand, 4625646 - 4625478
Alignment:
| Q |
118 |
gagctttccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttata--ctcaaagaagatggtgaaaaatatttaaggagt |
215 |
Q |
| |
|
|||||| | |||||| | ||||||||| |||||||||||| || ||||||||| |||||||| | | ||||||| ||| ||||||||||| ||||||| |
|
|
| T |
4625646 |
gagcttccgaaatttgctaaattgttgcatgtcaaatgagagtaagcccttttcgatgttttttttccccaaagaatatgatgaaaaatattaaaggagt |
4625547 |
T |
|
| Q |
216 |
gaaacaatattaccgggtaaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaa |
285 |
Q |
| |
|
|||||||||||| | |||||||||| || | || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
4625546 |
gaaacaatattaac-ggtaaaatcatccctgctccaatccatttaaaaattgcatacaaaatccttccaa |
4625478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 39635611 - 39635567
Alignment:
| Q |
234 |
aaaatcaccctcgttctaatccatttaaaaattgcataacaaatc |
278 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
39635611 |
aaaatcaccctcgttccgatccatttaaaaattgcatatcaaatc |
39635567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 29566670 - 29566883
Alignment:
| Q |
29 |
agcaataaaccatctttaagaagtaactttgatgacttttacaatctcctttgactcccaagttttagnnnnnnnnntaacctcattttgagctttccaa |
128 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||||||||||||||| ||||||||| |||||| ||||| |||| | ||| |||| |
|
|
| T |
29566670 |
agcaataaaccatctctaagtggtgactttgatgacttttacaatctcctccgactcccaaattttagaagaaaaattaaccccattccaaacttcccaa |
29566769 |
T |
|
| Q |
129 |
attttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattac |
228 |
Q |
| |
|
||||||||||| || || ||||| || || ||||||||| |||||||| | || |||||||||| |||||| |||||| ||| ||||||||||| |
|
|
| T |
29566770 |
attttccaaatgattacgtgccaaataagagtaagcccttttcgatgtttt-ttcttaaagaagatgatgaaaacaatttaaatagtaaaacaatattat |
29566868 |
T |
|
| Q |
229 |
cgggtaaaatcaccc |
243 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
29566869 |
cggataaaatcaccc |
29566883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 11309717 - 11309823
Alignment:
| Q |
136 |
aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa |
235 |
Q |
| |
|
||||||||| ||| |||||||| | ||||| ||| || ||||| || ||||||||||| || |||||| | |||||||||||||||||| |||||||| |
|
|
| T |
11309717 |
aaattgttgcatgccaaatgaggttaagcccctttcgacgttttttagccaaagaagatgatggaaaatagtcaaggagtgaaacaatattgccgggtaa |
11309816 |
T |
|
| Q |
236 |
aatcacc |
242 |
Q |
| |
|
||||||| |
|
|
| T |
11309817 |
aatcacc |
11309823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 6303647 - 6303753
Alignment:
| Q |
136 |
aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa |
235 |
Q |
| |
|
||||||||| ||| |||||||| || ||||| ||| || ||||| || ||||||||||| || |||||| | |||||||||||||||||| | |||||| |
|
|
| T |
6303647 |
aaattgttgcatgccaaatgagggtaagcccctttcgacgttttttagccaaagaagatgatggaaaatagtcaaggagtgaaacaatattgcggggtaa |
6303746 |
T |
|
| Q |
236 |
aatcacc |
242 |
Q |
| |
|
||||||| |
|
|
| T |
6303747 |
aatcacc |
6303753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 285
Target Start/End: Original strand, 38232783 - 38232940
Alignment:
| Q |
127 |
aaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatatt |
226 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| || ||| | ||| |||||||| || |||| || ||| ||||||||| | ||||||||||||||||| |
|
|
| T |
38232783 |
aaattttccaa-ttgttgcatgccaaatgaaggtaagctcatttcgatgttttttagccaaaaaatatgatgaaaaatagtcaaggagtgaaacaatata |
38232881 |
T |
|
| Q |
227 |
accgggtaaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaa |
285 |
Q |
| |
|
||||||||||||| | ||| ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38232882 |
gttgggtaaaatcaccaccattcctttccatttaaaatttgcataccaaatccttccaa |
38232940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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