View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_45 (Length: 410)
Name: NF1532_low_45
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 8412719 - 8412360
Alignment:
| Q |
13 |
aatattacaagatcaacaacaaaggcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcat |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8412719 |
aatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcat |
8412620 |
T |
|
| Q |
113 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412619 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
8412520 |
T |
|
| Q |
213 |
tcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatcca |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8412519 |
tcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatcca |
8412420 |
T |
|
| Q |
313 |
accctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaacttcaaag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8412419 |
accctctcaactcacagaggaacaaagaaatgctacaagattgttcaagcaacttcaaag |
8412360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 8434817 - 8434458
Alignment:
| Q |
13 |
aatattacaagatcaacaacaaaggcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcat |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8434817 |
aatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcat |
8434718 |
T |
|
| Q |
113 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434717 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
8434618 |
T |
|
| Q |
213 |
tcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatcca |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8434617 |
tcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatcca |
8434518 |
T |
|
| Q |
313 |
accctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaacttcaaag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8434517 |
accctctcaactcacagaggaacaaagaaatgctacaagattgttcaagcaacttcaaag |
8434458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 52 - 381
Target Start/End: Complemental strand, 8406560 - 8406231
Alignment:
| Q |
52 |
taatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406560 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8406461 |
T |
|
| Q |
152 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8406460 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8406361 |
T |
|
| Q |
252 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406360 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaag |
8406261 |
T |
|
| Q |
352 |
attgttcaaacaacttcaaagcaatattca |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8406260 |
attgttcaaacaacttcaaagcaatattca |
8406231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 52 - 381
Target Start/End: Original strand, 8395012 - 8395341
Alignment:
| Q |
52 |
taatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395012 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8395111 |
T |
|
| Q |
152 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
251 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8395112 |
ctattaaactcaataaaaatgattactctcactgctacaaccatgtctggagttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8395211 |
T |
|
| Q |
252 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaag |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395212 |
tgtcctctgctcttttattctctgctgccactggattattgattatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaag |
8395311 |
T |
|
| Q |
352 |
attgttcaaacaacttcaaagcaatattca |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8395312 |
attgttcaaacaacttcaaagcaatattca |
8395341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 8394730 - 8395010
Alignment:
| Q |
13 |
aatattacaagatcaacaacaaaggcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8394730 |
aatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcat |
8394829 |
T |
|
| Q |
113 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394830 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
8394929 |
T |
|
| Q |
213 |
tcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgc |
293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394930 |
tcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgc |
8395010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 8431742 - 8431388
Alignment:
| Q |
13 |
aatattacaagatcaacaacaaaggcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||| |||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
8431742 |
aatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcagacagaatagaaatgcat |
8431645 |
T |
|
| Q |
113 |
cacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctg |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8431644 |
cacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtgttgcagctg |
8431548 |
T |
|
| Q |
213 |
tcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatcca |
312 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| ||||||| || |||||||| | || || || |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8431547 |
tcacaagtggggaagttgcaccacttttggctctgaaactatcttctgctctcctgttttcggcagccaacggattgttgcttatcatgaacaaaatcca |
8431448 |
T |
|
| Q |
313 |
accctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaacttcaaag |
372 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
8431447 |
accctctcaactcacagaagaacaaaggaatgccacaagattgttcaagtaacttcaaag |
8431388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 257 - 372
Target Start/End: Original strand, 8375531 - 8375646
Alignment:
| Q |
257 |
tctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt |
356 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
8375531 |
tctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgt |
8375630 |
T |
|
| Q |
357 |
tcaaacaacttcaaag |
372 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
8375631 |
tcaagcaacttcaaag |
8375646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 8439572 - 8439457
Alignment:
| Q |
257 |
tctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgt |
356 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
8439572 |
tctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgt |
8439473 |
T |
|
| Q |
357 |
tcaaacaacttcaaag |
372 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
8439472 |
tcaagcaacttcaaag |
8439457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 372
Target Start/End: Complemental strand, 8417882 - 8417575
Alignment:
| Q |
71 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
170 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| |||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || | |
|
|
| T |
8417882 |
tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaaca |
8417783 |
T |
|
| Q |
171 |
tgattactctcactgctacaaccatgtctggtgttgcag---ctgt---cacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | |||| ||| | | || | || ||||| ||||| |||| | || |||||||| |
|
|
| T |
8417782 |
tgattactctcactgctacaaccatgtctggtcttgctgctactgttcccactacttgctcagattcatcacttttggctttgaagttatcttctgctct |
8417683 |
T |
|
| Q |
265 |
tttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaa |
364 |
Q |
| |
|
||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| | | ||||| ||| |||| |||||||||||||||| ||| |
|
|
| T |
8417682 |
tttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggagcaatgaaacactacaagattgttcaagcaa |
8417583 |
T |
|
| Q |
365 |
cttcaaag |
372 |
Q |
| |
|
|||||||| |
|
|
| T |
8417582 |
cttcaaag |
8417575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 8375339 - 8375475
Alignment:
| Q |
71 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
170 |
Q |
| |
|
|||||| |||||||||| || | || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8375339 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca |
8375438 |
T |
|
| Q |
171 |
tgattactctcactgctacaaccatgtctggtgttgc |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8375439 |
tgattactcttactgctacaaccatgtctggtgttgc |
8375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 8439764 - 8439628
Alignment:
| Q |
71 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
170 |
Q |
| |
|
|||||| |||||||||| || | || ||| | ||||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8439764 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaaca |
8439665 |
T |
|
| Q |
171 |
tgattactctcactgctacaaccatgtctggtgttgc |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8439664 |
tgattactcttactgctacaaccatgtctggtgttgc |
8439628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 41119301 - 41119223
Alignment:
| Q |
293 |
cttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaacttcaaa |
371 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||||| |
|
|
| T |
41119301 |
cttatcatgaacaaaccccaaccctctcaactcacagaggaacaaaggaatgctacaagaatgttcaaaaaccttcaaa |
41119223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 363
Target Start/End: Complemental strand, 8368931 - 8368635
Alignment:
| Q |
64 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
163 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8368931 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8368832 |
T |
|
| Q |
164 |
ataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctc |
263 |
Q |
| |
|
|| || ||||| |||||||| || || ||||| | ||| | |||| || |||||| ||||| || ||| | || | ||| | || ||||| | |
|
|
| T |
8368831 |
atcaacatgatcactctcaccgccaccgccatggcaggtatatcagc---cataagcggctccggtgctcctcttttagccctcaaattatcttctgcac |
8368735 |
T |
|
| Q |
264 |
ttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
363 |
Q |
| |
|
|||||||||| ||| | ||||| | || |||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8368734 |
ttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
8368635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 363
Target Start/End: Original strand, 8400479 - 8400775
Alignment:
| Q |
64 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
163 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8400479 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8400578 |
T |
|
| Q |
164 |
ataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctc |
263 |
Q |
| |
|
|| || ||||| |||||||| || || ||||| | ||| | |||| || |||||| ||||| || ||| | || | ||| | || || || | |
|
|
| T |
8400579 |
atcaacatgatcactctcaccgccaccgccatggcaggtatatcagc---cataagcggctccggtgctcctcttttagccctcaaattatcttcagcac |
8400675 |
T |
|
| Q |
264 |
ttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
363 |
Q |
| |
|
|||||||||| ||| | ||||| | || |||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8400676 |
ttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
8400775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 363
Target Start/End: Original strand, 8422056 - 8422352
Alignment:
| Q |
64 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
163 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8422056 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8422155 |
T |
|
| Q |
164 |
ataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctc |
263 |
Q |
| |
|
|| || ||||| |||||||| || || ||||| | ||| | |||| || |||||| ||||| || ||| | || | ||| | || || || | |
|
|
| T |
8422156 |
atcaacatgatcactctcaccgccaccgccatggcaggtatatcagc---cataagcggctccggtgctcctcttttagccctcaaattatcttccgcac |
8422252 |
T |
|
| Q |
264 |
ttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
363 |
Q |
| |
|
|||||||||| ||| | ||||| | || |||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8422253 |
ttttattctcagcttctactggtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
8422352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 368
Target Start/End: Complemental strand, 8404444 - 8404303
Alignment:
| Q |
229 |
tgcaccacttatggctatgaaactgtc--ctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactca |
326 |
Q |
| |
|
|||||| ||| ||||| ||||||| || ||||||| | ||||| ||||| ||||||||| |||| ||| | ||||||||||||||||| || ||||| |
|
|
| T |
8404444 |
tgcaccccttctggctttgaaactatcttctctgctatgttattttctgccgccactggaatattacttgtgatgaacaaaatccaaccttcacaacttg |
8404345 |
T |
|
| Q |
327 |
cagaggaacaaagaaatgctacaagattgttcaaacaacttc |
368 |
Q |
| |
|
|||| |||||||| || ||||||| | | || |||||||||| |
|
|
| T |
8404344 |
cagaagaacaaaggaacgctacaaaactctttaaacaacttc |
8404303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 8404604 - 8404470
Alignment:
| Q |
66 |
aactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaat |
165 |
Q |
| |
|
||||||||||| | | ||| ||||||| ||||||||| ||||||||| | ||| | || |||||||| |||| ||||| | ||| |||||||||| || |
|
|
| T |
8404604 |
aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat |
8404505 |
T |
|
| Q |
166 |
aaatatgattactctcactgctacaaccatgtctg |
200 |
Q |
| |
|
|| ||||| || ||||| ||| |||| ||||||| |
|
|
| T |
8404504 |
caacatgataacactcacagcttcaacaatgtctg |
8404470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 55331255 - 55331175
Alignment:
| Q |
293 |
cttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaacttcaaagc |
373 |
Q |
| |
|
||||| ||||||||||| || || || |||||| | || ||||||||||| ||||||||||| |||||||| |||| |||| |
|
|
| T |
55331255 |
cttattatgaacaaaattcagccttcgcaactcgcggaagaacaaagaaacgctacaagattattcaaacatcttcgaagc |
55331175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 55336696 - 55336620
Alignment:
| Q |
290 |
ttgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaacaact |
366 |
Q |
| |
|
||||||||||||||||| || || || || || ||| | |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
55336696 |
ttgcttatcatgaacaagattcagccttcgcagctcgctgaggaacagcgcaatgctacaagattgttcaaacaact |
55336620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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