View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_49 (Length: 405)
Name: NF1532_low_49
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_49 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Complemental strand, 52698997 - 52698602
Alignment:
| Q |
10 |
aataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctga |
109 |
Q |
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| T |
52698997 |
aataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctga |
52698898 |
T |
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| Q |
110 |
agaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggta |
209 |
Q |
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| T |
52698897 |
agaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggta |
52698798 |
T |
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| Q |
210 |
atgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaa |
309 |
Q |
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| T |
52698797 |
atgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaa |
52698698 |
T |
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| Q |
310 |
gaaagagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
405 |
Q |
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| T |
52698697 |
gaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
52698602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 405
Target Start/End: Complemental strand, 52721637 - 52721242
Alignment:
| Q |
10 |
aataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctga |
109 |
Q |
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| T |
52721637 |
aataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctga |
52721538 |
T |
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| Q |
110 |
agaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggta |
209 |
Q |
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| T |
52721537 |
agaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggta |
52721438 |
T |
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| Q |
210 |
atgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaa |
309 |
Q |
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| T |
52721437 |
ttccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaa |
52721338 |
T |
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| Q |
310 |
gaaagagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaa |
405 |
Q |
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| T |
52721337 |
gaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaa |
52721242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 52712816 - 52712424
Alignment:
| Q |
10 |
aataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctga |
109 |
Q |
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| T |
52712816 |
aataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctga |
52712717 |
T |
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| Q |
110 |
agaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggta |
209 |
Q |
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| T |
52712716 |
agaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaa |
52712617 |
T |
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| Q |
210 |
atgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaa |
309 |
Q |
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| T |
52712616 |
ttccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaa |
52712517 |
T |
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| Q |
310 |
gaaagagaatttcatttggacttccttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacc |
402 |
Q |
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| T |
52712516 |
gaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacc |
52712424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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