View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_5 (Length: 773)

Name: NF1532_low_5
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_5
NF1532_low_5
[»] chr2 (2 HSPs)
chr2 (301-773)||(34952689-34953160)
chr2 (31-167)||(34953162-34953298)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 301 - 773
Target Start/End: Complemental strand, 34953160 - 34952689
Alignment:
Q  301 acttatgagaagtgatgcccgttgatgatagaatttcaactaattttcgaccataaactatataaaacactttgttatctttgacatcggctacattatg 400  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  34953160 acttatgagaagtgatgcccgttgatgatagaatttcaagtaattttcgaccataaactatataaagcactttgttatcttagacatcggctacattatg 34953061  T
Q  401 gtccnnnnnnntttaggattacttcttataaaagaaacaattcactttaaaggagaaaataaagtaatcttaattgtgaataaataaattaggctaaaaa 500  Q
     |||       ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34953060 atccaaaaaaatttaggattgcttcttataaaagaaacaattcactttaaaggaaaaaataaagtaatcttaattgtgaataaataaattaggctaaaaa 34952961  T
Q  501 accgttttgatcctttatctgttattcaatgttcattttcgtctttcatcgttcaaaaaattaannnnnnnnatataatcaaaagattcattttagtgtc 600  Q
    |   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  34952960 attcttttgatcctttatcttttattcaatgttcattttcgtctttcatcgttcaaaaaattaa-tttttttatataatcaaaagattcattttagtgtc 34952862  T
Q  601 ttgtacaaatgagtccttatggtcttcctcaacatcatgtagacaattatgagttatttgtataaattatagtacatacaagatgttggagaaaatcaaa 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34952861 ttgtacaaatgagtccttatggtcttcctcaacatcatgtagacaattatgagttatttgtatagattatagtacatacaagatgttggagaaaatcaaa 34952762  T
Q  701 tgattcatttgtatattatatataatttataaaatataaaggactaaaaggaatctttagataaaagcaaaat 773  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34952761 tgattcatttgtatattatatataatttataaaatataaaggactaaaaggaatctttagataaaagcaaaat 34952689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 34953298 - 34953162
Alignment:
Q  31 atgattgctaaggaaaagaagtgtctcatatagtctacggtggaccgacgcttaaaaattactcaaaactttgacgatgaccaacgttaacaacttttaa 130  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34953298 atgattgctaaggaaaagaagtgtttcatatagtctacggtgggccgacgcttaaaaattactcaaaactttgacgatgaccaacgtcaacaacttttaa 34953199  T
Q  131 taaaagcctagggtcatctatgtctaagactgcgacc 167  Q
    |||||||||||||||||||||||||||||||||||||    
T  34953198 taaaagcctagggtcatctatgtctaagactgcgacc 34953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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