View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_52 (Length: 400)
Name: NF1532_low_52
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 7416985 - 7416635
Alignment:
| Q |
1 |
tattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacg |
100 |
Q |
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| T |
7416985 |
tattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacg |
7416886 |
T |
|
| Q |
101 |
agtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtct |
200 |
Q |
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| T |
7416885 |
agtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtct |
7416786 |
T |
|
| Q |
201 |
aaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7416785 |
aaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttg |
7416686 |
T |
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| Q |
301 |
tttttacttaatggaattctcaatattggggattttattccttggattcat |
351 |
Q |
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| T |
7416685 |
tttttacttaatggaattctcaatattggggattttattccttggattcat |
7416635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 7425964 - 7425621
Alignment:
| Q |
8 |
acataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacgagtacat |
107 |
Q |
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|||| |||||||| |||||||| |||||||||| |||||||||| ||||||||| | || ||||||||| ||||||||| |||||||| |||||||| |
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| T |
7425964 |
acattacttggtcccaatatggcccatattggcaacaagctcgtaaaatgtgtctgctagaactgtttagtgtaaaacgccttgagtcttatgagtacat |
7425865 |
T |
|
| Q |
108 |
aagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgtt |
207 |
Q |
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|||||||||||| | |||| ||| ||||| |||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
7425864 |
gagaaaacaagagttacatgctttcttgcacgaactatttaattcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgtt |
7425765 |
T |
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| Q |
208 |
ataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttgtttttac |
307 |
Q |
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|||||||| ||||| | || |||||||| ||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
7425764 |
ataagtcgcatggttttgggcaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgc |
7425665 |
T |
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| Q |
308 |
ttaatggaattctcaatattggggattttattccttggattcat |
351 |
Q |
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||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
7425664 |
ttaatggggtcctcaatgttggggattttattccttggattcat |
7425621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 70 - 350
Target Start/End: Complemental strand, 7431891 - 7431611
Alignment:
| Q |
70 |
ttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattt |
169 |
Q |
| |
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|||||||||| |||| | ||||||||||| |||||||| |||||| |||| | ||| |||| |||||||||| |||||||||||||| ||||| |||| |
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| T |
7431891 |
ttgtttagtgtaaaaagtctcgagtcttatgagtacatgagaaaagaagaattacatatttttctgcataaactcttcaattcaaaaaataaaactattt |
7431792 |
T |
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| Q |
170 |
tggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccc |
269 |
Q |
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|| |||| ||||||||||||||||| ||||| ||| ||||||| || |||||| | ||||| || |||||||| |||| ||| |||| |||||||||| |
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| T |
7431791 |
tgttgaaggaccatctttcaacttttagtcttaatattataagccgcatggtgttggggaagaaatacttggagaagagtgaaaatgttattatttcccc |
7431692 |
T |
|
| Q |
270 |
tgatgagtttaagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattca |
350 |
Q |
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||| ||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7431691 |
tgaagagtttaaggagatgttggatgagttgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
7431611 |
T |
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