View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_56 (Length: 386)
Name: NF1532_low_56
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 6885839 - 6885484
Alignment:
| Q |
1 |
tgtattctcctaacttattatattttcttccatctcaatcactaatcagtaatcactatgttggcatcaataataattcgagaaaatacagtaattcaat |
100 |
Q |
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| T |
6885839 |
tgtattctcctaacttattatattttcttccatct-------taatcattaatcactatgttggcatcaataataattcgagaaaatacagtaattcaat |
6885747 |
T |
|
| Q |
101 |
gcgaccatatgtgttgttaatgtatcgatctatgctacattttccatgtatatgttcaactcaaacctcacataaatttttgggctaattctatggtgcg |
200 |
Q |
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|| ||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885746 |
gcaaccatatgtgttgttgatgtatcggtctatgccacattttccatgtatatattcaactcaaacctcacataaatttttgggctaattctatggtgct |
6885647 |
T |
|
| Q |
201 |
aacgtgaaaagtcttgcacacactttttgtttttgtttgtaaagaaccgttgtcaata-tgttacaccaatggatcatgtttgactgtaattttcttcgc |
299 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885646 |
tacgtgaaaagtattgcacacgctatttgtttttgtttgtaaagaaccgttgtcaatagtgttacaccaatggatcatgtttgactgtaattttcttcgc |
6885547 |
T |
|
| Q |
300 |
ttagcatgccttgtgctagcgagtttgttagcaattcatttttagcttttgcaaacagaaaat |
362 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
6885546 |
ttagcatgccttgtgctagcgagttttttagcaaatcatttttagcttttgcaaacagaaaat |
6885484 |
T |
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