View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1532_low_59 (Length: 375)
Name: NF1532_low_59
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_59 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 33811157 - 33810798
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811157 |
gtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
33811058 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33811057 |
tcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcatccacatcatctc |
33810958 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33810957 |
cttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagctccccctgcaaaa |
33810858 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33810857 |
gtaatcaaatatccagatgtagattttcttgaatctatatctccggccatatcagcatct |
33810798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 33816075 - 33815716
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816075 |
gtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
33815976 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33815975 |
tcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcatccacatcatctc |
33815876 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33815875 |
cttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagctccccctgcaaaa |
33815776 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33815775 |
gtaatcaaatatccagatgtagattttcttgaatctatatctccggccatatcagcatct |
33815716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 4836306 - 4836665
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836306 |
gtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
4836405 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||||| |
|
|
| T |
4836406 |
tcttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcataactcttgtagaaacttcttcatccataggatctc |
4836505 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4836506 |
cttacaaccttcagtgattgcgatgtattcagcttccgtggtactcaaagcaatgcacttttgtaatcgcgattgccatgagacagctccccctgcaaaa |
4836605 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4836606 |
gtaatcaaatatccggatgtagattttcttgaatccacatctccggccatatcagtatct |
4836665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24380026 - 24380105
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttga |
80 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380026 |
gtgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 54967972 - 54968331
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||| |||||||| || || || |||| | |||||| ||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || | |
|
|
| T |
54967972 |
gtgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagt |
54968071 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| || |||||||| || ||||| || |||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
54968072 |
tcttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctc |
54968171 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
54968172 |
cttacaaccttcagtgattgcgatgtattcagcttctgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaa |
54968271 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
54968272 |
gtgatcaaatatccggaagtagattttctggaatctacatctcctgccatatctgcatct |
54968331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 2175 - 1816
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| ||||||||||||| |||||||||||||| || |||||||| || || || ||||| || | |
|
|
| T |
2175 |
gtgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagt |
2076 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | ||||| |
|
|
| T |
2075 |
tcttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctc |
1976 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||| ||||||| |||||||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1975 |
cttacaaccttcagtgattgcgatgtattcagctttcgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaa |
1876 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
1875 |
gtgatcaaatatccggaagtagattttctggaatctacatctcctgccatatctgcatct |
1816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 22981901 - 22982260
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| ||||| ||| || || |||||||| || |||||||| || || || ||||||||||| | |
|
|
| T |
22981901 |
gtgtgaactttctctactttcaacaatttactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagt |
22982000 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| || ||||| ||||| ||||| || |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
22982001 |
tcttgctgagatgaatcgcactctgactgtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctc |
22982100 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||| ||||||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
22982101 |
cttacaaccttcagtgattgtgatgtattcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaa |
22982200 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
22982201 |
gtaatcaaatatccttaagtcgattttctggaatctacatctcctgccatatctgcatct |
22982260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 23806507 - 23806148
Alignment:
| Q |
1 |
gtgtgaattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaat |
100 |
Q |
| |
|
||||||| |||||||| || || || |||| |||||||| ||||| ||| || || |||||||| || |||||||| || || || ||||||||||| | |
|
|
| T |
23806507 |
gtgtgaactttctctactttcaacaatttactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagt |
23806408 |
T |
|
| Q |
101 |
tcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctc |
200 |
Q |
| |
|
||||||| || ||||| ||||| ||||| || |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
23806407 |
tcttgctgagatgaatcgcactctgactgtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctc |
23806308 |
T |
|
| Q |
201 |
cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaa |
300 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||| ||||||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
23806307 |
cttacaaccttcagtgattgtgatgtattcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaa |
23806208 |
T |
|
| Q |
301 |
gtaatcaaatatccggatgtagattttcttgaatctacatctccggccatatcagcatct |
360 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
23806207 |
gtaatcaaatatccttaagtcgattttctggaatctacatctcctgccatatctgcatct |
23806148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
6 |
aattttctctatttgcagcagtttattctccaactcatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 25003630 - 25003790
Alignment:
| Q |
58 |
tacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
157 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
25003630 |
tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat |
25003727 |
T |
|
| Q |
158 |
tctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattg |
220 |
Q |
| |
|
|| ||||| ||||||| | ||| |||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
25003728 |
tcaggcctgactcttgcatgaacttcttcatccacgggatctccttacaaccgttagtgattg |
25003790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 25004185 - 25004317
Alignment:
| Q |
222 |
gatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccggatgta |
321 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||| |||||||||||||||||| ||| | |
|
|
| T |
25004185 |
gatgtattatgcttctgtggtacttaaagcaacacacttttgtagtcatgacatccatgagacaactccacctgtaaaagtaatcaaatatccaaatgca |
25004284 |
T |
|
| Q |
322 |
gattttcttgaatctacatctccggccatatca |
354 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25004285 |
gatttccttgaatctacatctcccgccatatca |
25004317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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