View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_62 (Length: 358)
Name: NF1532_low_62
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_62 |
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| [»] scaffold0564 (2 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7285 - 7512
Alignment:
| Q |
1 |
ttactaatgtattgtggaaagatttagctagaaatgttcattatctttcagcaattctctgatttcaattcactctctggagctactttggctctaaagc |
100 |
Q |
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| T |
7285 |
ttactaatgtattgtggaaaggtttagctagaaatgttcattatctttcagcaattctctgatttcaattcactctctggagctactttggctctaaagc |
7384 |
T |
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| Q |
101 |
agacttcttaattctatattcatatcatataattgttcaatattttatccattgttgatattacagatagcaaagatgaaatagctgatgaggcttcaat |
200 |
Q |
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| T |
7385 |
agacttcttaattctatattcatatcgtataattgttcaatactttatccattgttgagattacagatagctaagatgaaatagctgatgaggcttcaat |
7484 |
T |
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| Q |
201 |
tgcagttgcattgatcgcggtcgaagac |
228 |
Q |
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| T |
7485 |
tgcagttgcattgatcgcggtcgaagac |
7512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 7527 - 7613
Alignment:
| Q |
260 |
cagatctttaaaagaaaacagatacaccttgtagagttttttgttggaagttatttaaaattagcatacttgatactttagcatatt |
346 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7527 |
cagatctttaaaatttgacagatacaccttgtagagttttttgttggaagttatttaaaattagcatacttgatactttagcatatt |
7613 |
T |
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