View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1532_low_63 (Length: 349)

Name: NF1532_low_63
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1532_low_63
NF1532_low_63
[»] chr7 (4 HSPs)
chr7 (22-257)||(43349467-43349697)
chr7 (169-217)||(47317782-47317830)
chr7 (166-217)||(3614412-3614463)
chr7 (167-239)||(31594282-31594354)
[»] chr4 (5 HSPs)
chr4 (38-130)||(25954536-25954628)
chr4 (166-240)||(22438552-22438626)
chr4 (169-217)||(36505759-36505807)
chr4 (167-217)||(47110744-47110794)
chr4 (169-217)||(43036469-43036517)
[»] chr5 (5 HSPs)
chr5 (38-130)||(25868351-25868443)
chr5 (167-239)||(37979857-37979929)
chr5 (167-217)||(36759194-36759244)
chr5 (166-217)||(9042438-9042489)
chr5 (166-218)||(19870483-19870535)
[»] chr8 (3 HSPs)
chr8 (38-118)||(42431878-42431958)
chr8 (167-217)||(8037282-8037332)
chr8 (167-220)||(20477209-20477262)
[»] chr1 (2 HSPs)
chr1 (166-240)||(38043417-38043491)
chr1 (167-220)||(18243427-18243480)
[»] chr3 (8 HSPs)
chr3 (166-218)||(30715905-30715957)
chr3 (166-230)||(51011581-51011644)
chr3 (166-218)||(38108803-38108855)
chr3 (166-218)||(55146593-55146645)
chr3 (166-217)||(18946542-18946593)
chr3 (171-217)||(44846992-44847038)
chr3 (169-217)||(42993464-42993512)
chr3 (169-217)||(44006429-44006477)
[»] chr2 (1 HSPs)
chr2 (170-217)||(40614739-40614786)
[»] scaffold0146 (1 HSPs)
scaffold0146 (169-217)||(32324-32372)
[»] chr6 (1 HSPs)
chr6 (166-214)||(5613826-5613874)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 43349467 - 43349697
Alignment:
Q  22 catcatcatcattattcaatgaattgcttgcttattttgtttttcactttattgcttaaatgccttttataaactatccgagaaaaggtttgaggtgtta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349467 catcatcatcattattcaatgaattgcttgcttattttgtttttcactttattgcttaaatgccttttataaactatccgagaaaaggtttgaggtgtta 43349566  T
Q  122 tactatattgaaaattgcttttttgaccnnnnnnnnnnnnntcttattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttagga 221  Q
    |||||||||||||||||||||||||||              |  |||||||||||||||||||||||||||  |||||| || |||||||||||||||||    
T  43349567 tactatattgaaaattgcttttttgac----aaaggaaagtttctattgacacaagtaaaatacatcaata-tcccagcggtggttaactaccgttagga 43349661  T
Q  222 aaggcgccgacaattaacagtccatggcattccagc 257  Q
    ||| ||||| || ||||||| || ||||||||||||    
T  43349662 aagacgccggcagttaacagcccctggcattccagc 43349697  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 47317830 - 47317782
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  47317830 tgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgtt 47317782  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 3614412 - 3614463
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||| ||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  3614412 tattaacacaagtaaaatacgtaaatgcccccagcggtagttaactaccgtt 3614463  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 31594354 - 31594282
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttaggaaaggcgccgacaattaac 239  Q
    ||||||||||||||||||||| |||  ||||| | || |||||| |||||||||| | |||||| || |||||    
T  31594354 attgacacaagtaaaatacataaatgtccccaacggttgttaacaaccgttaggacatgcgccggcagttaac 31594282  T

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Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 25954628 - 25954536
Alignment:
Q  38 caatgaattgcttgcttattttgtttttcactttattgcttaaatgccttttataaactatccgagaaaaggtttgaggtgttatactatatt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25954628 caatgaattgcttgcttattttgtttttcactttattgcttaaatgtcttttataaactatccgagaaaaggtttgaggtgttatactatatt 25954536  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 22438626 - 22438552
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttaggaaaggcgccgacaattaaca 240  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  22438626 tattgacacaagtaaaatacataaatacccccagcggtagttaactatcgttaggaaaggcgccggcagttaaca 22438552  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 36505759 - 36505807
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||||||| |||||||| | |||||||||||| ||||||||||||||||    
T  36505759 tgacacaaataaaatacttaaatacccccagcggtagttaactaccgtt 36505807  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 47110794 - 47110744
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||||||||||||||||||   |||||||| ||| ||||||||||||||||    
T  47110794 attgacacaagtaaaatactgaaatacccctagcggtagttaactaccgtt 47110744  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 43036517 - 43036469
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||| | ||| |||| ||| ||||||||||||||||    
T  43036517 tgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgtt 43036469  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 25868443 - 25868351
Alignment:
Q  38 caatgaattgcttgcttattttgtttttcactttattgcttaaatgccttttataaactatccgagaaaaggtttgaggtgttatactatatt 130  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  25868443 caatgaattgcttgcttattttgtttttcactttattgcttacatgtcttttataaaccatccgagaaaaggtttgaggtgttatactatatt 25868351  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 37979857 - 37979929
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttaggaaaggcgccgacaattaac 239  Q
    ||||||||||||||||||| | |||||||||||| | ||||||| |||||||||  | ||||||||| |||||    
T  37979857 attgacacaagtaaaatacctaaatacccccagcggcagttaacgaccgttaggccatgcgccgacagttaac 37979929  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 36759244 - 36759194
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  36759244 attgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgtt 36759194  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 9042489 - 9042438
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||| ||||||||||||||  | |||||||||||| ||||||||||||||||    
T  9042489 tattaacacaagtaaaatatttaaatacccccagcggtagttaactaccgtt 9042438  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 19870483 - 19870535
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtta 218  Q
    |||||||||||||||||||| | ||||||| | || ||||||||| |||||||    
T  19870483 tattgacacaagtaaaatacttaaataccctccgcggtagttaacaaccgtta 19870535  T

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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 42431958 - 42431878
Alignment:
Q  38 caatgaattgcttgcttattttgtttttcactttattgcttaaatgccttttataaactatccgagaaaaggtttgaggtg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  42431958 caatgaattgcttgcttattttgtttttcactttattgcttaaatgtcttttataagccatccgagaaaaggtttgaggtg 42431878  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 8037332 - 8037282
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||||||| |||  ||||||| |||||||||| |||||    
T  8037332 attgacacaagtaaaatacataaatgtccccagcggtagttaactgccgtt 8037282  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 20477209 - 20477262
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttagg 220  Q
    ||||||||||||||||||| | ||| |||||||| | ||||||| |||||||||    
T  20477209 attgacacaagtaaaatacctaaatgcccccagcggcagttaacaaccgttagg 20477262  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 38043417 - 38043491
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttaggaaaggcgccgacaattaaca 240  Q
    |||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  38043417 tattgacagaagtaaaatacataaatacctccagcggtagttaactaccgttaggaaaggcgccgacagttaaca 38043491  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 18243480 - 18243427
Alignment:
Q  167 attgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttagg 220  Q
    ||||||||||||||||||||| ||| |||||||| | ||||||| |||||||||    
T  18243480 attgacacaagtaaaatacataaatgcccccagcggcagttaacaaccgttagg 18243427  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 30715905 - 30715957
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtta 218  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  30715905 tattgacacaagtaaaatacataaatacccccagcggtagttaactaccgtta 30715957  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 51011581 - 51011644
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgttaggaaaggcgccg 230  Q
    |||||||||||||||||||||| |||||||| | | ||||||||| |||||||||||||||||||    
T  51011581 tattgacacaagtaaaatacataaataccccaaacggtagttaac-accgttaggaaaggcgccg 51011644  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 38108803 - 38108855
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtta 218  Q
    |||||||||||||||||||| | |||||| ||||| |||||||||||||||||    
T  38108803 tattgacacaagtaaaatacttaaatacctccagcggtagttaactaccgtta 38108855  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 55146593 - 55146645
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtta 218  Q
    ||||||||||| |||||||||| |||||||||| |  ||||||||||||||||    
T  55146593 tattgacacaattaaaatacataaatacccccaacgatagttaactaccgtta 55146645  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 18946593 - 18946542
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||| ||||||    
T  18946593 tattgacacaagtaaaatacgtaaatgcccccagcagtaattaacaaccgtt 18946542  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 44846992 - 44847038
Alignment:
Q  171 acacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  44846992 acacaagtaaaatacttaaatacctccagcggtagttaactaccgtt 44847038  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 42993512 - 42993464
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||| | ||||||  |||||||| ||||||||||||    
T  42993512 tgacacaagtaaaatacttaaataccttcagcagtatttaactaccgtt 42993464  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 44006429 - 44006477
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||| ||||||||||| | ||| |||||||| ||||||||||||||||    
T  44006429 tgacataagtaaaatacttaaatgcccccagcggtagttaactaccgtt 44006477  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 40614786 - 40614739
Alignment:
Q  170 gacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||    
T  40614786 gacacaagtaaaatacttaaatgcccccagcagtagttaactaccgtt 40614739  T

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Target: scaffold0146 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 32372 - 32324
Alignment:
Q  169 tgacacaagtaaaatacatcaatacccccagcagtagttaactaccgtt 217  Q
    ||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  32372 tgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgtt 32324  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 5613826 - 5613874
Alignment:
Q  166 tattgacacaagtaaaatacatcaatacccccagcagtagttaactacc 214  Q
    ||||||| |||||||||||| | |||||||||||| |||||||||||||    
T  5613826 tattgacccaagtaaaatacttaaatacccccagcggtagttaactacc 5613874  T

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