View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_67 (Length: 336)
Name: NF1532_low_67
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 39082536 - 39082236
Alignment:
| Q |
20 |
agctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagta |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39082536 |
agctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagta |
39082437 |
T |
|
| Q |
120 |
acagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082436 |
acagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcc |
39082337 |
T |
|
| Q |
220 |
catcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082336 |
catcaccatccgatctttctttcctaacacgatggttaggagagtcactcacataaccactaccacctcgtacacaatgatgaatgtgtataccatgaat |
39082237 |
T |
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| Q |
320 |
t |
320 |
Q |
| |
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| |
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| T |
39082236 |
t |
39082236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 31727173 - 31726939
Alignment:
| Q |
20 |
agctatagtagcttgcatatttttgtcctcttcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727173 |
agctatagtagcttgcatatttttgtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagta |
31727074 |
T |
|
| Q |
120 |
acagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcc |
219 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31727073 |
acagccgttgatccatgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcc |
31726974 |
T |
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| Q |
220 |
catcaccatccgatctttctttcctaacacgatgg |
254 |
Q |
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| T |
31726973 |
catcaccatccgatctttctttcctaacacgatgg |
31726939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 39076048 - 39075959
Alignment:
| Q |
59 |
atcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaat |
148 |
Q |
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|||| ||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| |
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| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 7593333 - 7593472
Alignment:
| Q |
57 |
gaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgt |
156 |
Q |
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|||||| |||| || || ||||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| | |
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| T |
7593333 |
gaatcactatgtcccaaaagcataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccat |
7593432 |
T |
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| Q |
157 |
caaaacaatttgacaaggaacaatgatccacccaaatatg |
196 |
Q |
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| T |
7593433 |
cacgacaattagacaaagaacaatgatcaatccaaatatg |
7593472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 43131482 - 43131344
Alignment:
| Q |
59 |
atcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtca |
158 |
Q |
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|||| ||||||| || ||||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| |
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| T |
43131482 |
atcactatgacccaaaagcataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatca |
43131383 |
T |
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| Q |
159 |
aaacaatttgacaaggaacaatgatccacccaaatatga |
197 |
Q |
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||| || ||||| ||||||||||||||||||| |||| |
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| T |
43131382 |
ttacagttagacaaagaacaatgatccacccaaacatga |
43131344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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