View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_68 (Length: 333)
Name: NF1532_low_68
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 25988568 - 25988364
Alignment:
| Q |
26 |
gttgcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtatt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988568 |
gttgcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtatt |
25988469 |
T |
|
| Q |
126 |
tttataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgttta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988468 |
tttataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgttta |
25988369 |
T |
|
| Q |
226 |
gaaag |
230 |
Q |
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||||| |
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| T |
25988368 |
gaaag |
25988364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 25992676 - 25992472
Alignment:
| Q |
26 |
gttgcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtatt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25992676 |
gttgcaaaggcaaacaagaaacaaatatataaaaaagttcttgacgccatctctaatttttaagtgatgatatatgagatacaagtgcttgatttgtatt |
25992577 |
T |
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| Q |
126 |
tttataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgttta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25992576 |
tttataatgaaattttttggataaaatttcacacaaatgacaccttgacaatgtgaatgattaaaaaatgtttagatagaaatcggtcaaaagatgttta |
25992477 |
T |
|
| Q |
226 |
gaaag |
230 |
Q |
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||||| |
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| T |
25992476 |
gaaag |
25992472 |
T |
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