View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_69 (Length: 328)
Name: NF1532_low_69
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 1535266 - 1535442
Alignment:
| Q |
140 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctt |
239 |
Q |
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| T |
1535266 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagatgttacagttgacatattacgagaaaagctactaactcgagtctt |
1535365 |
T |
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| Q |
240 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatatt |
316 |
Q |
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| T |
1535366 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatatt |
1535442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 1535130 - 1535201
Alignment:
| Q |
4 |
gccatcaggcttctcctcagcaacattcttttcagtttcattcgccacttcgtcagtcacccaacgcaatat |
75 |
Q |
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| T |
1535130 |
gccatcaggcttctcctcagcaacattcttttcagtttcattcgccacttcgtcagtcacccaacgcaatat |
1535201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 1468499 - 1468611
Alignment:
| Q |
146 |
gataggaatttt-tcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctttgttg |
244 |
Q |
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||||||||| || |||| |||||||| |||||||||| | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||| |
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| T |
1468499 |
gataggaatgttgtcccattagggccgtgcttgagtcctgaattctgagacgttacagttgatacattgcgagaaaagctactaactcgagtccttgttg |
1468598 |
T |
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| Q |
245 |
catccattcaata |
257 |
Q |
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| T |
1468599 |
cagccattcaata |
1468611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 1138505 - 1138444
Alignment:
| Q |
4 |
gccatcaggcttctcctcagcaacattcttttcagtttcattcgccacttcgtcagtcaccc |
65 |
Q |
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| T |
1138505 |
gccaacaggcttgtcctcagcaacattcttttcagtttcatttgccacttcgtcagtcaccc |
1138444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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