View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_7 (Length: 686)
Name: NF1532_low_7
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Original strand, 2616506 - 2617155
Alignment:
| Q |
8 |
caccacagacaataaagaccatccccatccaacgacactcatcttctagacaagcttcttgagtaggaagccttccaaaaattaattgtcaactcataaa |
107 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2616506 |
caccacacacaataa-gaccatccccatccaacgacactcatcttctagacaagtttcttaagtaggaagccttccaaaaattaattgtcaactcataaa |
2616604 |
T |
|
| Q |
108 |
ttcctagtttcatagtggtccaaagttctaaacttgtaggaataagagataaaagatgcctcggtccctnnnnnnngttgccaagaaatttaattaaagt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2616605 |
ttcctagtttcatagtggtccaaagttctaaacttgtaggaataagagataaaagatgcctcggtccctaaaaaaagttgccaagaaatttaattaaagt |
2616704 |
T |
|
| Q |
208 |
ggatgtcaaatgctctagtttcagtgaattagaagaaaaatacgacttactaattttttgtttgaaacagcaaattattaggtagaattgtcgcaagatg |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
2616705 |
ggatgtcaaatgctctagtcgcagtgaattagaagaaaaatacgacttactaattttttgtttgaaacaacaaattattaggtagagttgtcgcaagatg |
2616804 |
T |
|
| Q |
308 |
caa-cataactcgcaaatgaaggagctacaatagacaccaaatataaacggagacccaaaagaaaagaccaccaaatatatgactttactatttgattaa |
406 |
Q |
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||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2616805 |
caaacagaactcgcaaatgaaggagctacaatagacatcaaatataaacggagacccaaaagaaaagaccaccaaatatataactttactatttgattaa |
2616904 |
T |
|
| Q |
407 |
aaagaatcaatcaaaatcacatataattcaaactagagaaaccacaagtgtaattaggtctaaaacttatggcaaatgcctattgaaaaacaacctacaa |
506 |
Q |
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| T |
2616905 |
aaagaatcgatcaaaatcacatataattcaaactaaagaaaccacaagtgtaattaggtctaaaacttatggcaaatgcctattgaaaaacaacctacaa |
2617004 |
T |
|
| Q |
507 |
gttttaacttaaatgcatttttatccctcttttttcactaatttatgattttagtttctcaacctttaaatatgaaaatatggtccctagtttttaaagt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617005 |
gttttaacttaaatgcatttttatccctcttttttcactaatttatgattttagtttctcaacctttaaatatgaaaatatggtccctagtttttaaagt |
2617104 |
T |
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| Q |
607 |
tttggaaattatctccaccacgagatttgaggtttgtttttatgatgtgta |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617105 |
tttggaaattatctccaccacgagatttgaggtttgtttttatgatgtgta |
2617155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 22047603 - 22047549
Alignment:
| Q |
309 |
aacataactcgcaaatgaaggagctacaatagacaccaaatataaacggagaccc |
363 |
Q |
| |
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|||| |||||||||| |||||| |||||||| |||||||||||| ||||||||| |
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| T |
22047603 |
aacaaaactcgcaaaataaggagttacaataggcaccaaatataagcggagaccc |
22047549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 22356486 - 22356540
Alignment:
| Q |
309 |
aacataactcgcaaatgaaggagctacaatagacaccaaatataaacggagaccc |
363 |
Q |
| |
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|||| ||||| |||| ||||||| |||||||| |||||||||||| ||||||||| |
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| T |
22356486 |
aacaaaactcacaaaagaaggagttacaataggcaccaaatataagcggagaccc |
22356540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 44357988 - 44357934
Alignment:
| Q |
309 |
aacataactcgcaaatgaaggagctacaatagacaccaaatataaacggagaccc |
363 |
Q |
| |
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|||| |||||||||| |||||| |||||||| |||||||||||| ||||||||| |
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| T |
44357988 |
aacaaaactcgcaaaataaggagttacaataggcaccaaatataagcggagaccc |
44357934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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