View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_77 (Length: 315)
Name: NF1532_low_77
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 4999653 - 4999351
Alignment:
| Q |
10 |
aataatataagaaagtaacataactcaatgtaatcatatgatc-gttcggtgtctgacacgatacgtatccgcgacatcgtgacatgcctaaaagtatac |
108 |
Q |
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| T |
4999653 |
aataatataagaaagtaacataactcaatgtaatcatataatccgttcggtgtctgacacgatacgtatccgcgacatcgtgacacgcctaaaagtatat |
4999554 |
T |
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| Q |
109 |
gt-----gcttcatagacaaaaacataattaataaacaagtaattaaaacataccaggagcaatgtaaccatatgaaccagcaactctagacatagcacc |
203 |
Q |
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| T |
4999553 |
gtgcttcgcttcatagacaaaaacataattaataaacaagtaattaaaacataccaggagcaatgtaaccatatgaaccagcaactctagacatagcacc |
4999454 |
T |
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| Q |
204 |
ttcatttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatattattactcttcacatcccta |
303 |
Q |
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| T |
4999453 |
ttcatttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatgttattactcttcacatcccta |
4999354 |
T |
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| Q |
304 |
tga |
306 |
Q |
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| T |
4999353 |
tga |
4999351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 26736056 - 26735978
Alignment:
| Q |
228 |
cttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatattattactcttcacatccctatga |
306 |
Q |
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| T |
26736056 |
cttagcaagtccaaaatcagcaacatgagcctcaaaatcagcatcaagcaatatattattagacttaacatccctatga |
26735978 |
T |
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