View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1532_low_81 (Length: 308)
Name: NF1532_low_81
Description: NF1532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1532_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 44975184 - 44974918
Alignment:
| Q |
30 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaaacatatgttttaatatgatttattttagttatgtcaccaagaan |
129 |
Q |
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| T |
44975184 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaaacatatgttttaatatgatttattttagttatgtcaccaagaat |
44975085 |
T |
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| Q |
130 |
nnnnnnaaggagactatataagatgtttccgagaaaatttctagtccctttaatccatatctgacgtccattctgctacttgattttttggacgtccgat |
229 |
Q |
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| T |
44975084 |
ttttttaaggagactatataagatgtttccaagaaaatttccagtccctttaatccatatctgacgtccattctactacttgattttttgaacgtcggat |
44974985 |
T |
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| Q |
230 |
atggatcacatggactagaatgggtgatttctagtgaggtctttttacatgtctgtcatattatatt |
296 |
Q |
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| T |
44974984 |
atggatcacagggactagaatgggtgatttctagtgaggtctttttacatgtctgtcatattatatt |
44974918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 44999602 - 44999547
Alignment:
| Q |
30 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
85 |
Q |
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| T |
44999602 |
attggagaggtcaatttccgcctgaatcacgtcaaagaattgtcaacaaaatgtaa |
44999547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 40910555 - 40910610
Alignment:
| Q |
30 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
85 |
Q |
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| T |
40910555 |
attggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
40910610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 44969434 - 44969379
Alignment:
| Q |
30 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
85 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
44969434 |
attggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
44969379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 44983757 - 44983702
Alignment:
| Q |
30 |
attggagaggtcaatttccagctgaatcacgccaaagaattgtcaacaaaatgtaa |
85 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
44983757 |
attggagaggtcaattgcagcctgaatcacgccaaagaattgtcaacaaaatgtaa |
44983702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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